Index

Symbols | A | C | E | M | O | P

Symbols

-allowed_clashes
posit command line option
-allowedClashes
combine_receptors command line option
make_pose_receptor command line option
-alternatePoseRMSD
posit command line option
-alternatePoses
posit command line option
-auto
make_pose_receptor command line option
-clashed_molecule_file <filename>
posit command line option
-cleanupWithProtein
posit command line option
-conftest
posit command line option
-dbase <filename>
posit command line option
-docked_molecule_file <filename>
posit command line option
-force_planar_aromatic
posit command line option
-hitlist_size
posit command line option
-ignore_nitrogen_stereo
posit command line option
-in <filename>
posit command line option
-ligand
make_pose_receptor command line option
-mcs
posit command line option
-minimum_probability
posit command line option
-minInitialProbability
posit command line option
-minInitialTanimotoCombo
posit command line option
-minTanimotoCombo
posit command line option
-molnames
posit command line option
-mpi_hostfile <filename>
posit command line option
-mpi_np <n>
posit command line option
-no_dots
posit command line option
-no_extra_output_files
posit command line option
-num_poses
posit command line option
-out
make_pose_receptor command line option
-outputall
posit command line option
-outputdir
combine_receptors command line option
-param
posit command line option
-param <filename>
combine_receptors command line option
make_pose_receptor command line option
-prealigned
combine_receptors command line option
-prefix
combine_receptors command line option
make_pose_receptor command line option
posit command line option
-probabilityStop
posit command line option
-protein
make_pose_receptor command line option
-receptor <filenames>
posit command line option
-receptors <filenames>
combine_receptors command line option
-reject_file
posit command line option
-report_file
posit command line option
-residue
make_pose_receptor command line option
-scatter
posit command line option
-score_file
posit command line option
-score_tag
posit command line option
-selectReceptorBy
posit command line option
-settings_file
posit command line option
-sortby
posit command line option
-status_file
posit command line option
-strain
posit command line option
-undocked_molecule_file
posit command line option
-verbose
combine_receptors command line option

A

APPNAME_OE_ARCH

C

combine_receptors command line option
-allowedClashes
-outputdir
-param <filename>
-prealigned
-prefix
-receptors <filenames>
-verbose

E

environment variable
APPNAME_OE_ARCH
OE_ARCH, [1], [2], [3]
OE_LICENSE
PATH, [1], [2], [3], [4]

M

make_pose_receptor command line option
-allowedClashes
-auto
-ligand
-out
-param <filename>
-prefix
-protein
-residue

O

OE_ARCH, [1], [2], [3]
OE_LICENSE

P

PATH, [1], [2], [3], [4]
posit command line option
-allowed_clashes
-alternatePoseRMSD
-alternatePoses
-clashed_molecule_file <filename>
-cleanupWithProtein
-conftest
-dbase <filename>
-docked_molecule_file <filename>
-force_planar_aromatic
-hitlist_size
-ignore_nitrogen_stereo
-in <filename>
-mcs
-minInitialProbability
-minInitialTanimotoCombo
-minTanimotoCombo
-minimum_probability
-molnames
-mpi_hostfile <filename>
-mpi_np <n>
-no_dots
-no_extra_output_files
-num_poses
-outputall
-param
-prefix
-probabilityStop
-receptor <filenames>
-reject_file
-report_file
-scatter
-score_file
-score_tag
-selectReceptorBy
-settings_file
-sortby
-status_file
-strain
-undocked_molecule_file