Extract Biological UnitsΒΆ
This floe uses Spruce OEExtractBioUnits to extract biological units. The required input is a molecule with an asymmetric unit from X-ray crystallography.
Extra Required Parameters
Dataset with DesignUnit to be modelled (data_source) : The dataset(s) to read records from Log Field (Field Type: String) : The field to store messages to floe reportDefault: Log Field Maximum number of atoms to process (integer) : Option to reject structures with larger than specified number of atoms.Default: 50000 Maximum number of parts to process (integer) : Option to reject structures with a larger than specified number of protein parts.Default: 24 Minimum sequence alignment score (integer) : Option to specify the lower threshold sequence alignment score.Default: 200 Prefer author records (boolean) : Option to use author generated BIOMT records over software generated ones.Default: True Option to superpose biounits (boolean) : Option to superpose the generated biounits.Default: False Failure Dataset (dataset_out) : Dataset with DesignUnit that failed to be successfully modelled.Default: failed_ExtractedBiologicalUnits Output Dataset (dataset_out) : Dataset with Modelled DesignUnit.Default: ExtractedBiologicalUnits Reference DU (data_source) : Dataset containing the reference DU.