snowball - Cube Documentation

• 2D Depiction
  • Molecule Annotation
  • Molecule Depiction
  • Molecule Highlighting
  • Molecule Similarity Depiction
  • Property Depiction
  • Protein-Ligand Visualization
  • Shape and Color Overlap Visualization
  • Visualizing 3D Information
• 2D Similarity
  • 2D Fingerprint
• 3D Similarity
  • Electrostatics
  • RMSD
  • Shape
• Cheminformatics
  • Atom-Bond Typing
  • InChI
  • Maximum Common Substructure Search
  • Molecular Complexity
  • Molecular Descriptor
  • Molecule Alignment
  • Molecule Annotation and Tagging
  • Molecule Filtering
  • Molecule Manipulation
  • Molecule Naming
  • Molecule Processing
  • Molecule Property Calculation
  • SMILES
  • Substructure Search
• Conformations
  • Conformer Manipulation
• Debugging
  • Count Records
  • Log Record Fields
• Floe Report
  • Brood Report Cube
  • Gameplan Report Cube
• Library Design
  • Apply ChEMBL Solubility Transformations
• Ligand Based Design
  • FastROCS
• Ligand Modeling
  • EON
  • ForceField
  • Freeform Conf
  • Freeform Conf Advanced
  • Freeform Solv
  • Hermite
  • Kriging
  • PB-Electrostatics
  • Quacpac
  • ROCS
• Ligand Preparation
  • Charging
  • OMEGA
  • Quacpac-prep
  • ROCS-prep
  • Szybki
  • Zap
• Logic
  • Classification
  • Field Conversion
  • Field Manipulation
  • Hit Lists
  • Numeric Comparison
  • Random Selection
  • Record Manipulation
  • String Comparison
  • Switches
• Spruce
  • DU to MD Ready Record
  • DesignUnit Type ETL
  • Input PDB codes
  • Input PDB/MMCIF/MTZ files
  • Make DesignUnit from Target
  • Make DesignUnit from Target and Ligand
  • Spruce BioUnit Extract
  • Spruce DU to Mol
  • Spruce DU to Receptor
  • Spruce Prep
  • Spruce Superpose
  • Spruce capping cube
  • Spruce depiction cube
  • Spruce minimize designunit cube
  • Spruce mutation cube
  • Spruce residue state cube
  • Spruce rotamers cube
  • Spruce sidechain builder cube
  • Spruce subset cube
  • Spruce subset within cube
  • Spruce swamp metal cube
  • Spruce update designunit cube
• Structure Based Design
  • Brood
  • Dock
  • Posit
  • Szmap
• Surface
  • Invert Surface
  • Is Surface Open
  • Make Grid From Surface
  • Make Spherical Surface
  • Molecular Surface
  • Polar Surface Area
  • Rotate Surface
  • Smooth Surface
  • Split Surface By Atoms
  • Surface Area
  • Surface To Molecule Distance
  • Surface Volume
  • Transform Surface
  • Translate Surface
• Unclassified
  • 2D Fragment Picker
  • 2D Torsion Picker
  • Brood Fragment Selector
  • Freeform Conf Restriction Energies
  • MDL Query Editor
• Utility
  • Add Query Style
  • Convert Conformers to Mols
  • Convert Shape Query to Record
  • Dataset Reader Optional
  • Exception Handler
  • Find Ligand
  • Find Protein
  • Find Receptor
  • Find ShapeQuery
  • Floe Failure Report
  • Named Collection Reader
  • Named Dataset Reader
  • Named File Reader
  • Pass Query to top of output
  • Process N records
  • Single File Reader
  • Success Counter