• Front Matter
  • Introduction
    • Organization
  • Rapid Similarity Searching of Large Molecule Files new
    • Problem
    • Ingredients
    • Difficulty level
    • Solution
    • Discussion
    • Related Python Cookbook recipes
    • See also in OEChem TK manual
    • See also in GraphSim TK manual
  • Visualizing Contact Map new
    • Problem
    • Ingredients
    • Difficulty level
    • Solution
    • Discussion
    • Related Python Cookbook recipes
    • See also in OEChem TK manual
    • See also in OEDepict TK manual
    • See also in Grapheme TK manual
  • Visualizing B-factor new
    • Problem
    • Ingredients
    • Difficulty level
    • Solution
    • Discussion
    • Related Python Cookbook recipes
    • See also in OEChem TK manual
    • See also in OEDepict TK manual
    • See also in Grapheme TK manual
  • Visualizing Protein-Ligand Interactions new
    • Problem
    • Ingredients
    • Difficulty level
    • Solution
    • Discussion
    • Related Python Cookbook recipes
    • See also in OEChem TK manual
    • See also in OEDepict TK manual
    • See also in Grapheme TK manual
  • Image Manipulation
    • Adding Logo to a PNG Image
    • Depicting Molecule in JPG
  • 2D Depiction
    • Generating Transparent PNG
    • Depicting Polar Hydrogens
    • Depicting Tripos Atom Types
    • Depicting a Molecule with Various Styles updated
    • Depicting Atom Contributions of XLogP
    • Depicting Fragment Contributions of XLogP
    • Depicting Atom Properties
    • Depicting Molecule Similarity Based on Fingerprints
    • Depicting Topological Polar Surface Area
    • Depicting Activities of Molecules
    • Depicting Reaction Components
    • Depicting Library Generation
    • Depicting CSV or SDF in PDF
    • Depicting CSV or SDF in HTML
    • Depicting CSV or SDF in XLSX (Excel)
    • Highlighting Fragments
    • Depicting Fragment Combinations
    • OEViz - A Simple Depiction Web Service
    • Depicting Multiple Matches
    • Depicting Molecular Graph Symmetry
    • Depicting Peptides
  • Visualizing 3D Information
    • Visualizing Molecular Dipole Moment
    • Visualizing Electron Density
    • Visualizing Contact Map new
    • Visualizing B-factor new
    • Visualizing Protein-Ligand Interactions new
  • Plotting (not the evil kind)
    • Drawing ROC Curve
  • Cheminformatics
    • Manipulating Large Molecule Files
    • Rapid Similarity Searching of Large Molecule Files new
    • Similarity Searching of Large Molecule Files
    • Enumerating Fragment Combinations
    • Finding Core Fragment of a Molecule Series
    • Enumerating Atom Substitutions
  • Molecular Modeling
    • Generating Canonical AM1-BCC Charges
  • Just for Fun
    • Picasso
    • OELove
    • Flag of New Mexico
    • OEHolidays
    • Depicting OpenEye Logo
    • Depicting molecule with shadow
    • OETree
    • OEAnime
    • Christmas Card
  • Glossary
  • Bibliography
    • Interaction Perception
 
OpenEye Python Cookbook version: Jun 2017
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© Copyright 2017, OpenEye Scientific Software, Inc. Last updated on Jun 09, 2017.