bool OEFastaToMol(OEMolBase &mol, const std::string &str)

Converts a FASTA sequence into a molecule.

The following code demonstrates how to create a molecule from a FASTA sequence using the OEFastaToMol function and prints out the number of alpha carbon atoms in the molecule.

        OEGraphMol mol = new OEGraphMol();

        oechem.OEFastaToMol(mol, "AVILMPTWSTNQCGPRHKDE");
        System.out.println(oechem.OECount(mol, new OEIsCAlpha()));

See also