2D Depiction

The recipes in this chapter illustrate how the OEDepict TK and Grapheme TK can be utilized to depict molecules and visualize properties calculated with other OpenEye toolkits.

Note

The interactive svg images generated by some of the examples below should be included into and HTML page with the SVG MIME type.

<object data="<imagename>.svg" type="image/svg+xml"></object>

• Generating Transparent PNG

• Depicting Polar Hydrogens

• Depicting Tripos Atom Types

• Depicting Molecule with Various Styles

Interactive molecule depictions in SVG

• Depicting Atom Contributions of XLogP

• Depicting Fragment Contributions of XLogP

• Depicting Atom Properties

• Depicting Molecule Similarity Based on Fingerprints

• Depicting Topological Polar Surface Area

• Depicting Activities of Molecules

• Depicting Reaction Components

• Depicting Library Generation

• Depicting CSV or SDF in PDF

• Depicting CSV or SDF in HTML

• Depicting CSV or SDF in XLSX (Excel)

• Depicting CSV or SDF in PPTX (PowerPoint)

slide 1	slide 2	slide 3	slide 4

• Highlighting Fragments

• Depicting Fragment Combinations

• OEViz - A Simple Depiction Web Service

• Depicting Multiple Matches

• Depicting Molecular Graph Symmetry

• Depicting Peptides

• Depicting Molecular Properties