OESuperposeMethod

Attention

This API is currently available in C++ and Python.

This namespace contains constants for superpositioning methods.

See also

• OESuperposeOptions class

Code Example

• Calculating superposition example

Default

The default superpositioning method is GlobalCarbonAlpha.

GlobalCarbonAlpha

Calculate superposition using the all matched alpha carbon atoms.

Global

Alias for Global.

SiteSequence

Calculate superposition using the input site residues. Site residues must be set with the OESuperpose::SetupRef member function of the OESuperpose class.

Site

Alias for SiteSequence.

DifferenceDistanceMatrix

Calculate superposition using the Distance Difference Matrix method. See Protein Superposition for more information.

DDM

Alias for DifferenceDistanceMatrix.

WeightedDifferenceDistanceMatrix

Calculate a weighted superposition using weights taken from the Difference Distance Matrix. See Protein Superposition for more information.

Weighted

Alias for WeightedDifferenceDistanceMatrix.

SecondaryStructureElements

Calculate superposition using an overlap of Secondary Structure Elements.

See also

• OESecondaryStructureSuperposition class

SSE

Alias for SecondaryStructureElements.

SiteHopper

Calculates the superposition using SiteHopper

See also

• Introduction

Undefined

Superposition method is undefined. No superposition will take place.