Modify Sample Name/Barcode Group for Downstream Processing - AbXtract

This cube will allow for the addition custom sample_name, barcode_group and barcode_round if these fields were not added during the barcoding step, or allows the opportunity to change these fields in AbXtract datasets within Orion.

Promoted Parameters

  • Input Dataset (data_source) : The dataset(s) to read records from.
  • Output name of the new dataset with modified barcode or sample name (dataset_out) : Output dataset to write to.
    Default: “”
  • Barcode Group (string) : Input a barcode group name that helps in overlapping populations and/or calculation of relative enrichment by population. IMPORTANT: 1) Will overwrite existing values. 2) If nothing input, will keep same value as before.
    Default: “”
  • Barcode Round (string) : Input a barcode round, must be ‘early’ or ‘late’ or ‘None’. IMPORTANT: 1) Will overwrite existing values. 2) If nothing input, will keep same value as before.
    Default: None
    Choices: early, late, None
  • Sample Name Input (string) : Input a sample name (if desired). IMPORTANT: 1) Will overwrite existing values. 2) If nothing input, will keep same value as before.
    Default: “”
  • Sequence Type (string) : Indicates whether sequence is sanger or ngs.
    Default: NGS
    Choices: Sanger, NGS
  • Failed Dataset Output Name (dataset_out) : Contains failed records from both upstream and downstream processes.
    Default: problematic