Tutorials

Contents:

• BROOD Floe Tutorial
  • Floes Used in the Tutorials
  • Input Parameters
  • BROOD Query Preparation
  • Running in ET and linkOnly modes
  • Interpretation of Results
• CHOMP Floe Tutorial
  • Floes Used in the Tutorials
  • Input and Output Parameters
  • Fragment Filtering Parameters
  • Guidelines for Control Parameters
  • Interpretation of Results
• Spruce Prep Tutorial
  • Floes Used in the Tutorials
  • Run the Protein Preparation Floes
  • Run the Protein Preparation Floes Using a Reference Design Unit
  • Reviewing the Floe Reports
  • Analyzing the Results
  • Next Steps
• Gameplan Tutorial
  • Floes used in the Tutorials
  • Prepare Protein and Bound Ligand from PDB Codes
  • Run the Gameplan Floe
  • Gameplan Results
  • Next Steps
• Filtering Docking Hits by Interactions Tutorial
  • Floes used in the Tutorial
  • Run the Floe
  • Exploring the Interaction Fingerprints
  • Filtering the Docked Poses
  • Next steps