AbXtract ™ Documentation¶
Documentation for AbXtract by Specifica
Contents:
- Introduction to AbXtract
- Tutorials
- Tutorial 1: NGS Pipeline with Custom Interactive Selection (PacBio), In-Vitro Library
- Tutorial 2: NGS Pipeline with Automated Top Lead Selection (PacBio), In-Vitro Library
- Tutorial 3: NGS and Sanger Pipeline with Automated Top Lead Selection (PacBio), In-Vitro Library
- Tutorial 4: NGS and Sanger Pipeline with Automated Top Lead Selection (Illumina), In-Vitro Library
- Tutorial 5: NGS Pipeline with Automated Top Lead Selection (PacBio), Patient Library
- Tutorial 6: NGS UMIs Extract and Annotation Floe
- Video Tutorials Featuring AbXtract
- How to Guides
- How to Use the Floe Report and NGS Select to Select Population of Interest
- How to Use the Floe Report and SANGER Select to Pick Population of Interest
- How to Condense a Dataset with Too Many Records
- I Performed Enrichment. How Do I Know which Population of My Given Sequence was Found?
- How to Reduce the Number of Fields in the Output
- How to Download the CSV of the Dataset of Records
- How to Visualize Custom Experimental Metrics
- How to upload data from an AIRR-compatible file
- How to export any dataset to an AIRR-compatible file
- Frequently Asked Questions
- Abxtract Floes - Documentation
- AbXtract/AIRR File to Orion Dataset - AbXtract
- Archive To Files
- Automated Top Lead Selection - AbXtract
- Cluster (AbScan) Antibody Binding Regions - AbXtract
- Condense Dataset by Region of Interest by Most Abundant - AbXtract
- Convert floe report to html files
- Custom NGS Select by Seq ID of Additional NGS Representatives by Group - AbXtract
- Custom SANGER Select of Additional NGS Representatives by Group - AbXtract
- Export AIRR Fields for Dataset - AbXtract
- Liability Quantification Across CDRs - AbXtract
- Logomaker for Antibody CDRs - AbXtract
- Modify Sample Name/Barcode Group for Downstream Processing - AbXtract
- Multiple Round Relative Abundance and Enrichment Calculation by Region of Interest (ROI) - AbXtract
- NGS IgMatcher, Annotation Only - AbXtract
- NGS Pipeline - AbXtract
- NGS Pipeline Efficiency - AbXtract
- NGS Pipeline with Automated Top Lead Selection - AbXtract
- NGS UMIs Extract and Annotation - AbXtract
- NGS and Sanger Pipeline - AbXtract
- NGS and Sanger Pipeline with Automated Top Lead Selection - AbXtract
- Overlap Among Different Datasets - AbXtract
- Quick Sanger from ABI Traces - AbXtract
- Quick Sanger from DNA or Amino Acid Sequence Files - AbXtract
- Single Round Relative Abundance and Enrichment Calculation by Region of Interest (ROI) - AbXtract
- Subset the Number of Fields for Export - AbXtract
- abxtract - Cube Documentation
- Key Fields
- Liability Metric Fields
- Biophysical Metric Fields
- Identifier Fields
- Overlap Fields of NGS to SANGER or NGS
- Enrichment, Abundance and Relative Abundance Fields
- Scaffold / Germline Call Fields
- Clustering Fields
- Annotation Fields
- Sequence Quality Fields
- Special Fields to Add to Upload (Use in Analyze Tool Only)
- AIRR Fields
- Release Notes