abxtract - Cube Documentation

• AbXtract, Liabilities
• AbXtract, Sanger
• AbXtract - Biophysical
  • Sequence-Based Biophysical Sequence Calculation
• AbXtract - Downstream Processing
  • AbXtract Processing, NGS Only
  • AbXtract Processing, NGS and SANGER
  • Binary Enrichment and Relative Abundance Calculation
  • Binary Input to Cluster
  • Binary Liability Calculation
  • Clustering by AbScan, Edit Distance, or 100% Homology
  • Condense Total Number of Sequences by Region of Interest (ROI)
  • Enrichment and Depletion Tracing of Clones
  • Enrichment and Relative Abundance Calculation
  • Export AIRR fields for dataset
  • Liabilities Quantification
  • Liabilities Quantification, Improved
  • Overlap Among Different NGS Barcode Populations
• AbXtract - SANGER Processing
  • Inputting SANGER File (Excel, TSV, CSV)
  • Inputting SANGER File (Excel, TSV, CSV)
  • Inputting SANGER File (Excel, TSV, CSV) - BETA
  • Inputting SANGER Records - BETA
  • OE Sanger Assembly
  • OE Sanger Assembly P
  • OE Sanger Read Pairing
  • Write Consolidated AbXtract Dataset
• AbXtract - Upstream Processing
  • Input File from NovaSeq
  • Inputting FASTQ for Illumina
  • Inputting FASTQ for Illumina
  • Inputting FASTQ for Illumina
  • Inputting FASTQ for PacBio
  • Inputting FASTQ for PacBio with Compressed Files
  • Inputting FASTQ for PacBio with Compressed Files
  • NovaSeq Binary Handler
  • Sequence Annotation with IgMatcher for Illumina
  • Sequence Annotation with IgMatcher for PacBio
  • Sequence Annotation with IgMatcher for PacBio
• Automated Lead Selection
  • Custom Select NGS Leads by Sequence ID with File
  • Select NGS Leads Matching SANGER
  • Select X Number of Non-Redundant Sequences by Cluster or ROI
  • Select X Number of Non-Redundant Sequences by Cluster or ROI
  • Select X Number of Non-Redundant Sequences by Cluster or ROI
  • Write Consolidated AbXtract Dataset
  • Write Consolidated AbXtract Dataset
  • Write Consolidated AbXtract Dataset
• Converting dataframe to blob.
  • Loads Cluster Assignment by Region of Interest
  • RecordToDataFrameBlob
  • Write Top Ranked Clusters
• Long-Read
  • Full-Chain
• Unclassified
  • Read Collections and Condense Data
  • Read Collections and Condense Data
  • Reads in Collection and Output Individual Record
  • Record Field Initializer Cube
• Upload, Modify or Subset
  • Modify Sample Name or Barcode Group in AbXtract Dataset
  • Subset AbXtract Fields
  • Upload AbXtract Compatible File
• Writing Reports and Datasets
  • Consolidating and Writing Datasets
  • Consolidating and Writing Datasets, Illumina
  • Consolidating and Writing Datasets, PacBio
  • Consolidating and Writing Datasets, Sanger
  • Long or Short-Read Sequence Identifier