Logomaker for Antibody CDRs - AbXtract¶
Category Paths
Solution-based/Biologics/Antibody Design
Role-based/Bioinformatician
Role-based/Biologist
Product-based/AbXtract
Description
This FLOE will produce sequence logos by region of interest (ROI) and output to FLOE REPORT
Parameter title in user interface (promoted name)
Split by cluster? Only applies to downstream records. (sequence_logo_by_cluster) type: boolean: Indicates whether to split sequences by cluster before creating sequence logos. Cluster logos are output only if not more than 500 records.Default: False
Parameter title in user interface (promoted name)
ROI for sequence logo (choose Chain1 CDR3 if short-read/single-chain data) (sequence_logo_roi) type: string: Name of regions to be aligned for sequence logo. Logo is output only if not more than 500 records.Default: CDR3 Chain_2 (Downstream Chain)Choices: CDR3 Chain_1 (Upstream Chain), CDR3 Chain_2 (Downstream Chain), HCDR3 and LCDR3
Parameter title in user interface (promoted name)
Write IgMatcher to File after Processing (write_csv) type: boolean: Write barcode group (if provided) to their own dataset after processing, Note: if only a single barcode group then no separate dataset will be written.Default: True
Parameter title in user interface (promoted name)
Processed RECORDS, long-read or single-chain (data_in) type: data_source: The dataset(s) to read records from