OEResidueSVGStandardMarkup¶
class OEResidueSVGStandardMarkup : public OEResidueSVGMarkupBase
This class represents OEResidueSVGStandardMarkup residue
SVG markup functor.
If this functor is passed to the
OE2DActiveSiteDisplayOptions::SetResidueSVGMarkupFunctor
method, the residues will be in svg image
when calling the OERenderActiveSite function.
See also
Generating Interactive SVG Images chapter in OEDepict TK manual
OE2DActiveSiteDisplayOptions::SetResidueSVGMarkupFunctormethodOEResidueSVGNoMarkup functor
The following methods are publicly inherited from OEResidueSVGMarkupBase:
Constructors¶
OEResidueSVGStandardMarkup(const std::string prefix="",
const std::string classname="residue",
const char separator='-')
Creates an OEResidueSVGStandardMarkup object.
- prefix
The string that will be added at the beginning of each residue
group id. For information about valid ids seeOEIsValidSVGGroupIdfunction. By default, no prefix will be added.- classname
The
class namethat is going to be used to mark residues. For information about valid names seeOEIsValidSVGClassNamefunction.- separator
The character used to separate the components (residue name, chain id, residue number) of the
group id
By default, the following will be showed in svg image for
marking a Leucine residue with chain id ‘A’ and residue number 715:
<g id='LEU-A-715' class='residue'>
..
list of drawing elements
..
</g>
CreateCopy¶
OEResidueSVGMarkupBase *CreateCopy() const
Deep copy constructor that returns a copy of the object. The memory for the returned OEResidueSVGNoMarkup object is dynamically allocated and owned by the caller.
GetClassName¶
std::string GetClassName(const OEChem::OEResidue &residue) const
Returns the string that specifies the group id
of a residue in an svg image.
GetGroupId¶
std::string GetGroupId(const OEChem::OEResidue &residue) const
Returns the string that specifies the class name
of a residue in an svg image.