Introduction to Python Floe development
Orion Platform
Data Record
DRConvert
Floe
Orion Client
Artemis
Orion Development Tutorials
Basic Development of Cubes and Floes
Creating a New Orion Package
Features
Requirements
Setup
Commands
Output Skeleton
Package Documentation
Utilizing Private Python Packages
Creating a Package Image (Advanced)
Tutorial: Creating a Tensorflow Package
Creating the initial package
Configuring Conda Requirements
Writing a Training Workfloe
Testing the Training Workfloe
Writing a Prediction Workfloe
Testing the Prediction Workfloe
Applying Advanced Techniques
Introduction
Concurrency
Computational Resources
Parallelization
Data Traffic
Collections I/O
Summary: Optimized Floe Design
Using the Floe Editor
OpenEye Orion Platform Packages
Orion Platform
Quick Start
Orion Platform Introduction
Orion Platform Cubes
Orion Platform Mixins
Orion Platform Ports
Orion Platform Parameters
Miscellaneous
Orion Environment Variables
Supported Operating Systems
Orion Platform Exceptions
Migrating from CubeRecord
Orion Client
Quick Start
Orion Client Examples
Orion Client Session
Orion Client Utilities
Orion Client Helpers
Orion Client Types
Orion Client Links
Orion CLI
Orion Client Exceptions
Floe
WorkFloes
Cubes
Parameters
Orion Integration
FloeSpecConverter
Dominant Resource Factor
Cube Types
Parameter Types
Test API
Capacity States
Datarecord
Quick Tour
OpenEye-datarecord API Reference
DRConvert
OpenEye-drconvert API Reference
Datarecord Type Coercion And Field Splitting
Using an External Schema
Artemis
Quick Start
Artemis Examples
Wrapper API
Pytest Markers
Packaging API
FloeTestCase
Pytest Options
Release History
Version 2023.3.1 Highlights for Cube and Floe Developers
Orion Integration, Version 2023.3.1
v6.1.2
Version 2023.2.1 Highlights
Orion Integration, Version 2023.2.1
v6.0.0
Version 2023.1.2 Highlights
Orion Integration, Version 2023.1.2
v5.1.1
Orion Integration, Version 2023.1.1
v5.0.0
Orion Integration, Version 2022.3.1
v4.5.4
v4.5.3
v4.5.2
v4.5.1
v4.5.0
v4.4.1 September 2022
v4.4.0 June 2022
v4.3.2 May 2022
v4.3.1 February 2022
v4.3.0 February 2022
v4.2.7 November 2021
v4.2.6 November 2021
v4.2.5 October 2021
v4.2.4 October 2021
v4.2.3 October 2021
v4.2.2 October 2021
v4.2.1 October 2021
v4.2.0 October 2021
v4.1.0 September 2021
v4.0.0 May 2021
v3.1.3 January 2021
v3.1.2 December 2020
v3.1.1 December 2020
v3.1.0 November 2020
v3.0.1 August 2020
v3.0.0 August 2020
v2.4.6 May 2020
v2.4.5 April 2020
v2.4.4 March 2020
v2.4.3 March 2020
v2.4.2 February 2020
v2.4.1 January 2020
v2.4.0 December 2019
v2.3.0: November 2019
v2.2.1 November 2019
v2.2.0 November 2019
v2.1.0 October 2019
v2.0.1 September 2019
v2.0.0 August 2019
v1.1.4 August 2019
v1.1.2 August 2019
v1.1.0 August 2019
v1.0.2 July 2019
v1.0.1 July 2019
v1.0.0 June 2019
v0.3.2 June 2019
v0.3.1 May 2019
v0.3.0 May 2019
v0.2.3 May 2019
v0.2.2 May 2019
v0.2.1 March 2019
v0.2.0 January 2019
v0.1.14 February 2019
v0.1.13 January 2019
v0.1.12 December 2018
v0.1.11 November 2018
v0.1.10 November 2018
v0.1.9 October 2018
v0.1.8 October 2018
v0.1.6 September 2018
v0.1.5 September 2018
v0.1.4 September 2018
Release History
Version 2023.3.1 Highlights for Cube and Floe Developers
Orion Integration, Version 2023.3.1
v6.1.2
Orion Client
Orion Platform
Floe
Version 2023.2.1 Highlights
Orion Integration, Version 2023.2.1
v6.0.0
Floe
Orion Client
Orion Platform
DRConvert
Version 2023.1.2 Highlights
Orion Integration, Version 2023.1.2
v5.1.1
Orion Client
Orion Integration, Version 2023.1.1
v5.0.0
Orion Client
Floe
Orion Platform
Orion Integration, Version 2022.3.1
v4.5.4
Orion Client
v4.5.3
Orion Client
v4.5.2
Orion Client
v4.5.1
Floe
v4.5.0
Artemis
Orion Platform
Orion Client
Floe
v4.4.1 September 2022
Orion Client
Orion Platform
v4.4.0 June 2022
Floe
Orion Client
DRConvert
Orion Platform
v4.3.2 May 2022
DRConvert
v4.3.1 February 2022
Orion Client
v4.3.0 February 2022
drconvert
Orion Client
Orion Platform
Floe
v4.2.7 November 2021
v4.2.6 November 2021
v4.2.5 October 2021
Orion Client
v4.2.4 October 2021
Orion Platform
Orion Client
v4.2.3 October 2021
Orion Platform
v4.2.2 October 2021
Datarecord
v4.2.1 October 2021
Floe
v4.2.0 October 2021
Orion Client
DRConvert
v4.1.0 September 2021
Orion Client
Artemis
drconvert
Floe
v4.0.0 May 2021
Orion Client
Orion Platform
Artemis
Floe
DRConvert
Datarecord
v3.1.3 January 2021
v3.1.2 December 2020
v3.1.1 December 2020
v3.1.0 November 2020
v3.0.1 August 2020
v3.0.0 August 2020
Bugfixes:
v2.4.6 May 2020
v2.4.5 April 2020
v2.4.4 March 2020
v2.4.3 March 2020
v2.4.2 February 2020
v2.4.1 January 2020
v2.4.0 December 2019
v2.3.0: November 2019
v2.2.1 November 2019
Bugfixes:
v2.2.0 November 2019
Bugfixes:
v2.1.0 October 2019
v2.0.1 September 2019
Bugfixes:
v2.0.0 August 2019
v1.1.4 August 2019
v1.1.2 August 2019
v1.1.0 August 2019
Bugfixes:
v1.0.2 July 2019
v1.0.1 July 2019
v1.0.0 June 2019
Bugfixes:
v0.3.2 June 2019
v0.3.1 May 2019
Bugfixes:
v0.3.0 May 2019
v0.2.3 May 2019
Bugfixes:
v0.2.2 May 2019
Bugfixes:
Bugfixes
v0.2.1 March 2019
Bugfixes
v0.2.0 January 2019
v0.1.14 February 2019
v0.1.13 January 2019
v0.1.12 December 2018
v0.1.11 November 2018
v0.1.10 November 2018
v0.1.9 October 2018
v0.1.8 October 2018
v0.1.6 September 2018
v0.1.5 September 2018
v0.1.4 September 2018
Legal Notices
Copyright and Trademarks
Sample Code
Citation
Orion
®
Floes
Toolkits and Applications
OpenEye Web Services
Technology Licensing
GCC
GCC RUNTIME LIBRARY EXCEPTION
GNU GENERAL PUBLIC LICENSE
Orion Programming Documentation
All OpenEye Documentation
»
Contents
»
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
_
__iter__() (drconvert.ArchiveConverter method)
(drconvert.CSVConverter method)
(drconvert.MolFileConverter method)
(drconvert.OEDUConverter method)
(drconvert.RecordConvertToCSV method)
(drconvert.RecordConvertToMols method)
(drconvert.RecordConvertToOEDU method)
(drconvert.SmilesFileConverter method)
A
add_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
add_directory() (artemis.packaging.OrionTestPackage method)
add_field() (datarecord.OERecord method)
add_file() (artemis.packaging.OrionTestPackage method)
add_relation() (datarecord.OEFieldMeta method)
ArchiveConverter (class in drconvert)
artemis
module
artemis.packaging
module
artemis.test
module
artemis.wrappers
module
assertWorkFloeComplete() (artemis.test.FloeTestCase method)
assign_paths() (orionclient.session.OrionSession method)
AuthorizationRequired
B
Backoff (class in orionclient.utils)
BadResponse
Balance (class in orionclient.types)
BaseParameter (class in floe.api.parameters)
begin() (floe.api.cubes.Cube method)
BooleanFieldParameter (class in orionplatform.parameters.fields)
BooleanParameter (class in floe.api.parameters)
C
cancel() (artemis.wrappers.WorkFloeWrapper method)
(orionclient.types.WorkFloeJob method)
check() (orionclient.types.Service method)
check_field() (datarecord.OERecord method)
CheckCache() (datarecord.OERecord method)
chunks() (orionplatform.parameters.files.FileStream method)
Classification (class in orionclient.types)
clear() (datarecord.OEFieldMeta method)
(datarecord.OERecord method)
(datarecord.OERecordMeta method)
clear_value() (datarecord.OERecord method)
close() (orionclient.types.Shard method)
(orionclient.types.ShardCollection method)
CollectionInputParameter (class in orionplatform.parameters.collections)
CollectionInputPort (class in orionplatform.ports)
CollectionInputPortV2 (class in orionplatform.ports)
CollectionOutputParameter (class in orionplatform.parameters.collections)
CollectionOutputPort (class in orionplatform.ports)
CollectionOutputPortV2 (class in orionplatform.ports)
CollectionPortsMixin (class in orionplatform.mixins)
collections
collections() (orionplatform.parameters.collections.CollectionStream method)
CollectionStream (class in orionplatform.parameters.collections)
CollectionWrapper (class in artemis.wrappers)
complete() (orionclient.types.File method)
ComputeCube (class in floe.api.cubes)
count (artemis.wrappers.OutputDatasetWrapper property)
create() (orionclient.types.Dataset class method)
(orionclient.types.Shard class method)
(orionclient.types.ShardCollection class method)
create_link() (in module datarecord)
(orionclient.session.OrionSession method)
create_multipart_file() (orionclient.types.File class method)
create_paths() (orionclient.session.OrionSession method)
create_resource() (orionclient.session.OrionSession method)
CSVConversionOptions (class in drconvert)
CSVConverter (class in drconvert)
Cube
cube
(class in floe.api.cubes)
(class in orionclient.types)
emitting items
execution order
group
group, parallel
methods
packaging
parallel
parameters
port
testing
type
CubeGroup (class in floe.api.cubes)
CubeParametersMixin (class in floe.api.cubes)
Cubes
CubeTestRunner (class in floe.test)
CurrentBalance (class in orionclient.types)
CustomHandler (class in datarecord)
CycleDetails (class in floe.api.cubes)
cyclic
workflows
D
datarecord
module
Dataset (class in orionclient.types)
DatasetInputParameter (class in orionplatform.parameters.datasets)
DatasetOutputParameter (class in orionplatform.parameters.datasets)
datasets
DatasetStream (class in orionplatform.parameters.datasets)
DatasetWrapper (class in artemis.wrappers)
DecimalFieldParameter (class in orionplatform.parameters.fields)
DecimalParameter (class in floe.api.parameters)
delete_atom_record() (datarecord.OEMolRecord method)
delete_bond_record() (datarecord.OEMolRecord method)
delete_conf_record() (datarecord.OEMolRecord method)
delete_field() (datarecord.OERecord method)
delete_logs() (orionclient.types.WorkFloeJob method)
delete_resource() (orionclient.session.OrionSession method)
delete_tokens() (orionclient.types.Service method)
download() (orionclient.types.Dataset method)
(orionclient.types.File method)
(orionclient.types.Shard method)
download_to_file() (orionclient.types.Dataset method)
(orionclient.types.File method)
(orionclient.types.Shard method)
drconvert
module
drconvert.pandas
module
drconvert.parquet
module
E
emit() (floe.api.cubes.Cube method)
emitting items
cube
end() (floe.api.cubes.Cube method)
execution
order, cube
F
FieldParameter (class in orionplatform.parameters.fields)
FieldSelector (class in orionplatform.parameters.fields)
FieldSelectorParameter (class in orionplatform.parameters.fields)
File (class in orionclient.types)
FileInputParameter (class in floe.api.parameters)
(class in orionplatform.parameters.files)
FileOutputParameter (class in floe.api.parameters)
(class in orionplatform.parameters.files)
files
FileStream (class in orionplatform.parameters.files)
FileWrapper (class in artemis.wrappers)
finalize() (orionclient.types.Dataset method)
FloatFieldParameter (in module orionplatform.parameters.fields)
Floe
floe.api.cubes
module
floe.api.parameters
module
FloeTestCase (class in artemis.test)
flush() (datarecord.OERecord method)
(orionclient.types.Dataset method)
from_collection() (artemis.wrappers.CollectionWrapper class method)
from_file() (artemis.wrappers.CollectionWrapper class method)
(artemis.wrappers.DatasetWrapper class method)
(artemis.wrappers.FileWrapper class method)
from_json() (floe.api.parameters.BaseParameter class method)
from_name() (orionclient.types.Service class method)
G
get() (artemis.wrappers.OutputCollectionWrapper method)
get_atom_record() (datarecord.OEMolRecord method)
get_atom_records() (datarecord.OEMolRecord method)
get_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_attributes() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_bond_record() (datarecord.OEMolRecord method)
get_bond_records() (datarecord.OEMolRecord method)
get_bytes() (datarecord.OERecord method)
get_child_record() (datarecord.OERecord method)
get_child_records() (datarecord.OERecord method)
get_conf_record() (datarecord.OEMolRecord method)
get_conf_records() (datarecord.OEMolRecord method)
get_converter() (in module drconvert)
get_costs() (orionclient.types.WorkFloeJob method)
get_count() (orionclient.types.ShardCollection method)
get_current_balance() (orionclient.session.OrionSession method)
get_current_project() (orionclient.session.OrionSession method)
get_current_workfloe_job() (in module orionclient.helpers.floe)
get_dataset() (artemis.wrappers.DatasetWrapper class method)
get_default_output_folder() (orionclient.session.OrionSession method)
get_environment_log() (orionclient.types.WorkFloePackage method)
get_field() (datarecord.OERecord method)
(orionclient.links.RecordLink method)
(orionplatform.parameters.fields.FieldSelector method)
get_field_meta() (datarecord.OERecord method)
get_field_relations() (datarecord.OEFieldMeta method)
get_file() (artemis.wrappers.FileWrapper class method)
get_float_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_inspection_result() (orionclient.types.WorkFloePackage method)
get_int_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_link() (orionclient.session.OrionSession method)
get_mol() (datarecord.OEMolRecord method)
get_mol_reference() (datarecord.OEMolRecord method)
get_name() (datarecord.OEFieldMeta static method)
(datarecord.OERecordMeta static method)
get_options() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_orion_resource() (orionclient.links.OrionLink method)
(orionclient.links.RecordLink method)
(orionclient.links.ShardLink method)
get_packages() (artemis.test.FloeTestCase method)
get_parameter_group() (floe.api.cubes.Cube method)
get_paths() (orionclient.session.OrionSession method)
get_primary_mol_field() (datarecord.OEMolRecord method)
get_profile_config() (in module orionclient.session)
get_record() (orionclient.links.RecordLink method)
get_record_meta() (datarecord.OERecord method)
get_redirect() (orionclient.types.Service method)
get_reference() (datarecord.OERecord method)
get_related_fields() (datarecord.OEFieldMeta method)
get_resource() (orionclient.session.OrionSession method)
get_session() (in module orionclient.session)
get_shard() (orionclient.links.ShardLink method)
get_source_id() (datarecord.OERecord method)
get_str_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
get_user_profile() (orionclient.session.OrionSession method)
get_value() (orionplatform.parameters.fields.FieldSelector method)
get_version() (datarecord.OERecord static method)
get_workfloe() (artemis.wrappers.WorkFloeWrapper class method)
GetAtomRecords() (datarecord.OEMolRecord method)
GetBondRecords() (datarecord.OEMolRecord method)
GetImpl() (datarecord.OERecord method)
GetValue() (datarecord.OEFieldMeta static method)
(datarecord.OERecordMeta static method)
group
cube
parallel cube
H
has_atom_record() (datarecord.OEMolRecord method)
has_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
has_bond_record() (datarecord.OEMolRecord method)
has_child_record() (datarecord.OERecord method)
has_child_records() (datarecord.OERecord method)
has_conf_record() (datarecord.OEMolRecord method)
has_field() (datarecord.OERecord method)
has_mol() (datarecord.OEMolRecord method)
has_option() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
has_value() (datarecord.OERecord method)
hypercubes
I
identifier (artemis.wrappers.CollectionWrapper property)
(artemis.wrappers.DatasetWrapper property)
(artemis.wrappers.FileWrapper property)
(artemis.wrappers.OutputCollectionWrapper property)
(artemis.wrappers.OutputDatasetWrapper property)
(artemis.wrappers.OutputFileWrapper property)
(artemis.wrappers.WorkFloeWrapper property)
in_orion() (in module orionclient.session)
input_ports() (floe.api.cubes.Cube method)
InputMolFieldParameter (class in orionplatform.parameters.fields)
InputSystemTagParameter (class in orionplatform.parameters.base)
InstanceGroup (class in orionclient.types)
IntegerFieldParameter (class in orionplatform.parameters.fields)
IntegerParameter (class in floe.api.parameters)
InvalidAPIVersion
InvalidCredentials
is_authenticated() (orionclient.session.OrionSession method)
is_empty() (datarecord.OERecord method)
is_input() (floe.api.parameters.BaseParameter method)
is_na() (datarecord.OERecord method)
is_output() (floe.api.parameters.BaseParameter method)
is_subset_of() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
J
job
scheduling
tag
json() (floe.api.parameters.BaseParameter method)
(floe.api.parameters.ParameterGroup method)
JSONParameter (class in floe.api.parameters)
L
leave_project() (orionclient.session.OrionSession method)
LedgerEntry (class in orionclient.types)
LinkFieldParameter (class in orionplatform.parameters.fields)
list_resources() (orionclient.session.OrionSession method)
list_shards() (orionclient.types.ShardCollection method)
list_tags() (orionclient.session.OrionSession method)
list_tokens() (orionclient.types.Service method)
logs (artemis.wrappers.WorkFloeWrapper property)
logs() (orionclient.types.WorkFloeJob method)
ls_path() (orionclient.session.OrionSession method)
M
Merge() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
Meta (class in datarecord)
Meta.Annotation (class in datarecord)
Meta.Annotation.Author (in module datarecord)
Meta.Annotation.Comments (in module datarecord)
Meta.Annotation.Description (in module datarecord)
Meta.Constraints (class in datarecord)
Meta.Display (class in datarecord)
Meta.Display.AsMean (in module datarecord)
Meta.Display.AsRange (in module datarecord)
Meta.Display.Chem (class in datarecord)
Meta.Display.ColorBy (in module datarecord)
Meta.Display.Hidden (in module datarecord)
Meta.Display.HiddenByDefault (in module datarecord)
Meta.Display.HiddenFrom3D (in module datarecord)
Meta.Display.HiddenFromPlot (in module datarecord)
Meta.Display.HiddenFromSpreadsheet (in module datarecord)
Meta.Display.HiddenFromTileView (in module datarecord)
Meta.Display.MarkerBy (in module datarecord)
Meta.Display.Precision1 (in module datarecord)
Meta.Display.Precision2 (in module datarecord)
Meta.Display.Precision3 (in module datarecord)
Meta.Display.Precision4 (in module datarecord)
Meta.Display.PreferLog (in module datarecord)
Meta.Display.SizeBy (in module datarecord)
Meta.Display.Values (class in datarecord)
Meta.Display.XAxis (in module datarecord)
Meta.Display.YAxis (in module datarecord)
Meta.Flags (class in datarecord)
Meta.Flags.Calculated (in module datarecord)
Meta.Flags.Categorical (in module datarecord)
Meta.Flags.Deprecated (in module datarecord)
Meta.Flags.DoNotSave (in module datarecord)
Meta.Flags.Experimental (in module datarecord)
Meta.Flags.GenericData (in module datarecord)
Meta.Flags.ID (in module datarecord)
Meta.Flags.Independent (in module datarecord)
Meta.Flags.Invalid (in module datarecord)
Meta.Flags.Optional (in module datarecord)
Meta.Flags.Ordinal (in module datarecord)
Meta.Flags.PDBData (in module datarecord)
Meta.Flags.Predicted (in module datarecord)
Meta.Flags.Range (in module datarecord)
Meta.Flags.Readonly (in module datarecord)
Meta.Flags.SDData (in module datarecord)
Meta.Flags.UserCreated (in module datarecord)
Meta.Hints (class in datarecord)
Meta.Hints.Chem (class in datarecord)
Meta.Hints.Chem.ChemicalName (in module datarecord)
Meta.Hints.Chem.Conformer (in module datarecord)
Meta.Hints.Chem.CXSMILES (in module datarecord)
Meta.Hints.Chem.DNASequence (in module datarecord)
Meta.Hints.Chem.FingerPrint (in module datarecord)
Meta.Hints.Chem.GraphMol (in module datarecord)
Meta.Hints.Chem.InChi (in module datarecord)
Meta.Hints.Chem.InChiKey (in module datarecord)
Meta.Hints.Chem.Ligand (in module datarecord)
Meta.Hints.Chem.Markush (in module datarecord)
Meta.Hints.Chem.MolReference (in module datarecord)
Meta.Hints.Chem.OrionMolURL (in module datarecord)
Meta.Hints.Chem.PrimaryMol (in module datarecord)
Meta.Hints.Chem.PrimaryTarget (in module datarecord)
Meta.Hints.Chem.Protein (in module datarecord)
Meta.Hints.Chem.ProteinSequence (in module datarecord)
Meta.Hints.Chem.Query (in module datarecord)
Meta.Hints.Chem.Reaction (in module datarecord)
Meta.Hints.Chem.Receptor (in module datarecord)
Meta.Hints.Chem.RNASequence (in module datarecord)
Meta.Hints.Chem.RotorOffsetCompression (in module datarecord)
Meta.Hints.Chem.SelectivityTarget (in module datarecord)
Meta.Hints.Chem.SMARTS (in module datarecord)
Meta.Hints.Chem.SMILES (in module datarecord)
Meta.Hints.Chem.Virtual (in module datarecord)
Meta.Hints.Chem.VirtualID (in module datarecord)
Meta.Hints.ClusterHead (in module datarecord)
Meta.Hints.ClusterID (in module datarecord)
Meta.Hints.ClusterX (in module datarecord)
Meta.Hints.ClusterY (in module datarecord)
Meta.Hints.Date (in module datarecord)
Meta.Hints.Image (in module datarecord)
Meta.Hints.Image_JPG (in module datarecord)
Meta.Hints.Image_PNG (in module datarecord)
Meta.Hints.Image_SVG (in module datarecord)
Meta.Hints.ImageURL (in module datarecord)
Meta.Hints.LargerValuesBetter (in module datarecord)
Meta.Hints.ShardID (in module datarecord)
Meta.Hints.SmallerValuesBetter (in module datarecord)
Meta.Hints.URL (in module datarecord)
Meta.Limits (class in datarecord)
Meta.Limits.Lower (in module datarecord)
Meta.Limits.Upper (in module datarecord)
Meta.Relations (class in datarecord)
Meta.Relations.AppliesTo (in module datarecord)
Meta.Relations.Chem (class in datarecord)
Meta.Relations.Chem.AtomDataFor (in module datarecord)
Meta.Relations.Chem.BondDataFor (in module datarecord)
Meta.Relations.Chem.ConfDataFor (in module datarecord)
Meta.Relations.Chem.LigandFor (in module datarecord)
Meta.Relations.Chem.MolDataFor (in module datarecord)
Meta.Relations.Chem.QueryFor (in module datarecord)
Meta.Relations.Chem.ReceptorFor (in module datarecord)
Meta.Relations.ChildOf (in module datarecord)
Meta.Relations.CommentFor (in module datarecord)
Meta.Relations.DetailsFor (in module datarecord)
Meta.Relations.ErrorsFor (in module datarecord)
Meta.Relations.GroupID (in module datarecord)
Meta.Relations.MeanFor (in module datarecord)
Meta.Relations.MeasurementLowerLimitFor (in module datarecord)
Meta.Relations.MeasurementUpperLimitFor (in module datarecord)
Meta.Relations.QualifierFor (in module datarecord)
Meta.Relations.ReplacedBy (in module datarecord)
Meta.Relations.SplitFrom (in module datarecord)
Meta.Relations.UnitsFor (in module datarecord)
Meta.Source (class in datarecord)
Meta.Source.ID (in module datarecord)
Meta.Source.JobID (in module datarecord)
Meta.Source.Query (in module datarecord)
Meta.Source.ServiceID (in module datarecord)
Meta.Source.Version (in module datarecord)
Meta.Units (class in datarecord)
Meta.Units.Amount (class in datarecord)
Meta.Units.Amount.Item (in module datarecord)
Meta.Units.Amount.Mol (in module datarecord)
Meta.Units.Angle (class in datarecord)
Meta.Units.Angle.deg (in module datarecord)
Meta.Units.Angle.rad (in module datarecord)
Meta.Units.Charge (class in datarecord)
Meta.Units.Charge.Coulomb (in module datarecord)
Meta.Units.Charge.PlanckCharge (in module datarecord)
Meta.Units.Concentration (class in datarecord)
Meta.Units.Concentration.M (in module datarecord)
Meta.Units.Concentration.mg_per_kg (in module datarecord)
Meta.Units.Concentration.mM (in module datarecord)
Meta.Units.Concentration.ng_per_ml (in module datarecord)
Meta.Units.Concentration.nM (in module datarecord)
Meta.Units.Concentration.ppb (in module datarecord)
Meta.Units.Concentration.ppm (in module datarecord)
Meta.Units.Concentration.uM (in module datarecord)
Meta.Units.Current (class in datarecord)
Meta.Units.Current.A (in module datarecord)
Meta.Units.Current.mA (in module datarecord)
Meta.Units.Current.uA (in module datarecord)
Meta.Units.Density (class in datarecord)
Meta.Units.Density.e_per_A3 (in module datarecord)
Meta.Units.Density.n_per_A3 (in module datarecord)
Meta.Units.DipoleMoment (class in datarecord)
Meta.Units.DipoleMoment.D (in module datarecord)
Meta.Units.DipoleMoment.statCm (in module datarecord)
Meta.Units.ElectricalPotential (class in datarecord)
Meta.Units.ElectricalPotential.V (in module datarecord)
Meta.Units.Energy (class in datarecord)
Meta.Units.Energy.Cal (in module datarecord)
Meta.Units.Energy.eV (in module datarecord)
Meta.Units.Energy.Hartree (in module datarecord)
Meta.Units.Energy.J (in module datarecord)
Meta.Units.Energy.kCal (in module datarecord)
Meta.Units.Energy.kCal_per_mol (in module datarecord)
Meta.Units.Energy.kJ (in module datarecord)
Meta.Units.Energy.kJ_per_mol (in module datarecord)
Meta.Units.Energy.kT (in module datarecord)
Meta.Units.Energy.RT (in module datarecord)
Meta.Units.Entropy (class in datarecord)
Meta.Units.Entropy.kCal_per_mol_K (in module datarecord)
Meta.Units.Entropy.kJ_per_mol_K (in module datarecord)
Meta.Units.Force (class in datarecord)
Meta.Units.Force.dyn (in module datarecord)
Meta.Units.Force.eV_per_A (in module datarecord)
Meta.Units.Force.H_per_Bohr (in module datarecord)
Meta.Units.Force.kCal_per_mol_A (in module datarecord)
Meta.Units.Force.kCal_per_mol_nm (in module datarecord)
Meta.Units.Force.kCal_per_mol_rad (in module datarecord)
Meta.Units.Force.kJ_per_mol_A (in module datarecord)
Meta.Units.Force.kJ_per_mol_nm (in module datarecord)
Meta.Units.Force.kJ_per_mol_rad (in module datarecord)
Meta.Units.Force.N (in module datarecord)
Meta.Units.Frequency (class in datarecord)
Meta.Units.Frequency.GHz (in module datarecord)
Meta.Units.Frequency.Hz (in module datarecord)
Meta.Units.Frequency.kHz (in module datarecord)
Meta.Units.Frequency.MHz (in module datarecord)
Meta.Units.Frequency.Recip_cm (in module datarecord)
Meta.Units.Frequency.THz (in module datarecord)
Meta.Units.Length (class in datarecord)
Meta.Units.Length.A (in module datarecord)
Meta.Units.Length.Bohr (in module datarecord)
Meta.Units.Length.m (in module datarecord)
Meta.Units.Length.mm (in module datarecord)
Meta.Units.Length.nm (in module datarecord)
Meta.Units.Length.um (in module datarecord)
Meta.Units.MagneticField (class in datarecord)
Meta.Units.MagneticField.G (in module datarecord)
Meta.Units.MagneticField.T (in module datarecord)
Meta.Units.Mass (class in datarecord)
Meta.Units.Mass.Da (in module datarecord)
Meta.Units.Mass.g (in module datarecord)
Meta.Units.Mass.kg (in module datarecord)
Meta.Units.Mass.mg (in module datarecord)
Meta.Units.Mass.ng (in module datarecord)
Meta.Units.Mass.ug (in module datarecord)
Meta.Units.Power (class in datarecord)
Meta.Units.Power.W (in module datarecord)
Meta.Units.Pressure (class in datarecord)
Meta.Units.Pressure.atm (in module datarecord)
Meta.Units.Pressure.bar (in module datarecord)
Meta.Units.Pressure.kPa (in module datarecord)
Meta.Units.Pressure.mmHg (in module datarecord)
Meta.Units.Pressure.Pa (in module datarecord)
Meta.Units.Pressure.torr (in module datarecord)
Meta.Units.Temp (class in datarecord)
Meta.Units.Temp.C (in module datarecord)
Meta.Units.Temp.F (in module datarecord)
Meta.Units.Temp.K (in module datarecord)
Meta.Units.Time (class in datarecord)
Meta.Units.Time.days (in module datarecord)
Meta.Units.Time.fs (in module datarecord)
Meta.Units.Time.hours (in module datarecord)
Meta.Units.Time.min (in module datarecord)
Meta.Units.Time.ms (in module datarecord)
Meta.Units.Time.ns (in module datarecord)
Meta.Units.Time.ps (in module datarecord)
Meta.Units.Time.s (in module datarecord)
Meta.Units.Time.us (in module datarecord)
Meta.Units.Velocity (class in datarecord)
Meta.Units.Velocity.A_per_ps (in module datarecord)
Meta.Units.Velocity.m_per_s (in module datarecord)
Meta.Units.Volume (class in datarecord)
Meta.Units.Volume.A3 (in module datarecord)
Meta.Units.Volume.l (in module datarecord)
Meta.Units.Volume.ml (in module datarecord)
Meta.Units.Volume.nl (in module datarecord)
Meta.Units.Volume.ul (in module datarecord)
metadata (artemis.wrappers.CollectionWrapper property)
methods
cube
mkdir() (artemis.packaging.OrionTestPackage method)
modify_parameter() (floe.api.cubes.Cube method)
modify_parameter_group() (floe.api.cubes.Cube method)
module
artemis
artemis.packaging
artemis.test
artemis.wrappers
datarecord
drconvert
drconvert.pandas
drconvert.parquet
floe.api.cubes
floe.api.parameters
orion-platform
orionclient.exceptions
orionclient.helpers
orionclient.links
orionclient.session
orionclient.types
orionclient.utils
orionplatform.exceptions
orionplatform.mixins
orionplatform.parameters.base
orionplatform.parameters.collections
orionplatform.parameters.datasets
orionplatform.parameters.fields
orionplatform.parameters.files
orionplatform.parameters.secrets
MolConversionOptions (class in drconvert)
MolFieldParameter (class in orionplatform.parameters.fields)
MolFileConverter (class in drconvert)
multistage
workflows
N
neighbors() (floe.api.cubes.Cube method)
nested
workflows
NotFoundResponse
O
OEDUConverter (class in drconvert)
OEField (class in datarecord)
OEFieldMeta (class in datarecord)
OEMatchField (class in datarecord)
OEMolRecord (class in datarecord)
OEPrimaryMolField (class in datarecord)
OEReadRecord() (in module datarecord)
OERecord (class in datarecord)
OERecordMeta (class in datarecord)
OEWriteRecord() (in module datarecord)
open() (orionclient.types.ShardCollection method)
order
cube execution
orion-platform
module
orionclient.exceptions
module
orionclient.helpers
module
orionclient.links
module
orionclient.session
module
orionclient.types
module
orionclient.utils
module
OrionConnectionError
OrionError
OrionLink (class in orionclient.links)
OrionLinkError
orionplatform.exceptions
module
orionplatform.mixins
module
orionplatform.parameters.base
module
orionplatform.parameters.collections
module
orionplatform.parameters.datasets
module
orionplatform.parameters.fields
module
orionplatform.parameters.files
module
orionplatform.parameters.secrets
module
OrionServiceError
OrionSession (class in orionclient.session)
OrionTag (class in orionclient.types)
OrionTestPackage (class in artemis.packaging)
OrionTimeout
OrionUser (class in orionclient.types)
output_ports() (floe.api.cubes.Cube method)
OutputCollectionWrapper (class in artemis.wrappers)
OutputDatasetWrapper (class in artemis.wrappers)
OutputFileWrapper (class in artemis.wrappers)
OutputMolFieldParameter (class in orionplatform.parameters.fields)
P
package() (artemis.packaging.OrionTestPackage method)
packaging
cube
parallel
cube
cube group
ParallelComputeCube (class in floe.api.cubes)
ParallelCubeGroup (class in floe.api.cubes)
ParallelMixin (class in floe.api.cubes)
parameter_groups() (floe.api.cubes.Cube method)
ParameterConnection (class in floe.api.cubes)
ParameterException
ParameterGroup (class in floe.api.parameters)
parameterize_workfloe() (in module orionclient.helpers.parameterize)
parameters
cube
parameters() (floe.api.cubes.Cube method)
parquet_to_dataframe() (in module drconvert.parquet)
path (artemis.wrappers.OutputDatasetWrapper property)
(artemis.wrappers.OutputFileWrapper property)
PlatformException
port
cube
PrimaryMolFieldParameter (class in orionplatform.parameters.fields)
process() (floe.api.cubes.ComputeCube method)
Project (class in orionclient.types)
PromotedParameterGroup (class in floe.api.parameters)
R
RateLimitedResponse
read_record_file_to_dataframe() (in module drconvert.pandas)
reason (artemis.wrappers.WorkFloeWrapper property)
record_file_to_parquet() (in module drconvert.parquet)
record_to_dataframe() (in module drconvert.pandas)
record_to_du() (drconvert.drconvert method)
record_to_mol() (drconvert.drconvert method)
RecordBytesInputPort (class in orionplatform.ports)
RecordBytesOutputPort (class in orionplatform.ports)
RecordConvertToCSV (class in drconvert)
RecordConvertToMols (class in drconvert)
RecordConvertToOEDU (class in drconvert)
RecordInputPort (class in orionplatform.ports)
RecordLink (class in orionclient.links)
RecordOutputPort (class in orionplatform.ports)
RecordPortsMixin (class in orionplatform.mixins)
records() (artemis.wrappers.OutputDatasetWrapper method)
(orionclient.types.Dataset method)
refresh_resource() (orionclient.session.OrionSession method)
refresh_resource_until() (orionclient.session.OrionSession method)
remove_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
remove_directory() (artemis.packaging.OrionTestPackage method)
remove_file() (artemis.packaging.OrionTestPackage method)
remove_option() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
remove_paths() (orionclient.session.OrionSession method)
replace_parameter() (floe.api.parameters.ParameterGroup method)
(floe.api.parameters.PromotedParameterGroup method)
retrieve_token() (orionclient.session.OrionSession method)
S
save() (artemis.packaging.OrionTestPackage method)
scheduling
job
Secret (class in orionclient.types)
SecretInputParameter (class in orionplatform.parameters.secrets)
SecretStream (class in orionplatform.parameters.secrets)
send_inputs() (floe.test.CubeTestRunner method)
serialization
workflow
Service (class in orionclient.types)
set_atom_record() (datarecord.OEMolRecord method)
set_attribute() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
set_attributes() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
set_bond_record() (datarecord.OEMolRecord method)
set_bytes() (datarecord.OERecord method)
set_conf_record() (datarecord.OEMolRecord method)
set_initializer_input() (floe.test.CubeTestRunner method)
set_mol() (datarecord.OEMolRecord method)
set_mol_reference() (datarecord.OEMolRecord method)
set_option() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
set_options() (datarecord.OEFieldMeta method)
(datarecord.OERecordMeta method)
set_record_meta() (datarecord.OERecord method)
set_reference() (datarecord.OERecord method)
set_secret() (orionclient.types.Service method)
set_source_id() (datarecord.OERecord method)
set_value() (orionclient.types.Secret method)
setUpClass() (artemis.test.FloeTestCase class method)
Shard (class in orionclient.types)
shard collections
ShardCollection (class in orionclient.types)
ShardInputPort (class in orionplatform.ports)
ShardLink (class in orionclient.links)
ShardOutputPort (class in orionplatform.ports)
ShardPortsMixin (class in orionplatform.mixins)
shards() (orionplatform.parameters.collections.CollectionStream method)
share_resource() (orionclient.session.OrionSession method)
SinkCube (class in floe.api.cubes)
size (artemis.wrappers.OutputFileWrapper property)
sleep() (orionclient.utils.Backoff method)
SmilesFileConverter (class in drconvert)
SourceCube (class in floe.api.cubes)
stalling
start() (artemis.wrappers.WorkFloeWrapper method)
(floe.test.CubeTestRunner method)
(orionclient.types.WorkFloeJob class method)
stat_path() (orionclient.session.OrionSession method)
state (artemis.wrappers.WorkFloeWrapper property)
status (artemis.wrappers.WorkFloeWrapper property)
StringFieldParameter (class in orionplatform.parameters.fields)
StringParameter (class in floe.api.parameters)
T
tag
job
tag_resource() (orionclient.session.OrionSession method)
TemporaryPath (class in orionclient.utils)
testing
cube
thisown (datarecord.OEFieldMeta property)
(datarecord.OEMolRecord property)
(datarecord.OEPrimaryMolField property)
(datarecord.OERecord property)
(datarecord.OERecordMeta property)
Token (class in orionclient.types)
trigger_debug_export() (orionclient.types.WorkFloeJob method)
try_hard_to_create_shard() (in module orionclient.helpers.collections)
try_hard_to_download_shard() (in module orionclient.helpers.collections)
type
cube
Types (class in datarecord)
Types.Record (in module datarecord)
Types.RecordVec (in module datarecord)
U
unshare_resource() (orionclient.session.OrionSession method)
untag_resource() (orionclient.session.OrionSession method)
update() (orionclient.types.Shard method)
(orionclient.types.ShardCollection method)
update_resource() (orionclient.session.OrionSession method)
upload() (orionclient.types.Dataset class method)
(orionclient.types.File class method)
(orionclient.types.Shard method)
(orionclient.types.WorkFloePackage class method)
upload_file() (orionclient.types.Shard method)
upload_part() (orionclient.types.File method)
UserProfile (class in orionclient.types)
using_orion() (artemis.wrappers method)
V
validate() (floe.api.parameters.BaseParameter method)
(floe.api.parameters.DecimalParameter method)
(floe.api.parameters.IntegerParameter method)
(floe.api.parameters.StringParameter method)
(orionplatform.parameters.base.InputSystemTagParameter method)
validate_authentication() (orionclient.session.OrionSession method)
ValidationError
W
wait() (artemis.wrappers.WorkFloeWrapper method)
wait_on() (floe.api.cubes.Cube method)
WorkFloeJob (class in orionclient.types)
WorkFloePackage (class in orionclient.types)
WorkFloeSpec (class in orionclient.types)
WorkFloeWrapper (class in artemis.wrappers)
workflow
serialization
workflows
cyclic
multistage
nested
write() (floe.api.cubes.SinkCube method)
(orionclient.types.Dataset method)