OEHighlightByStick

class OEHighlightByStick : public OEHighlightBase

The OEHighlightByStick class allows the customization of the stick highlighting style that is associated with the OEHighlightStyle.Stick constant. See example in Figure: Example of highlighting using the ‘stick’ style.

Example of highlighting using the ‘stick’ style

The OEHighlightByStick class stores the following properties:

Property	Get method	Set method	Corresponding namespace / class / type
external highlight	GetAtomExternalHighlightRatio	SetAtomExternalHighlightRatio	floating point
atom label	GetAtomLabelMonochrome	SetAtomLabelMonochrome	boolean
color	GetColor	SetColor	OEColor
stick width scale	GetStickWidthScale	SetStickWidthScale	floating point number

See also

• OEAddHighlighting function

• OEHighlightStyle namespace

• OEHighlightByBallAndStick class

• OEHighlightByColor class

• OEHighlightByCogwheel class

• OEHighlightByLasso class

• Highlighting chapter

Constructors

OEHighlightByStick(const OESystem::OEColor &color, double stickWidthScale=3.0,
                   bool monochrome=true, double atomExternalHighlightRatio=0.0)

Creates an OEHighlightByStick object with the specified parameters.

color

The color used for highlighting. See also OEHighlightByStick.SetColor method.

stickWidthScale

The multiplier that can be used to increase or decrease the stick width of the highlighted bond(s). See also OEHighlightByStick.SetStickWidthScale method.

monochrome

Defines whether or not to change the color of the atom label of the highlighted atom(s). See also OEHighlightByStick.SetAtomLabelMonochrome method.

atomExternalHighlightRatio

A ratio that can be used to extend atom highlights to bonds not being highlighted. See also OEHighlightByStick.SetAtomExternalHighlightRatio method.

OEHighlightByStick(const OEHighlightByStick &rhs)

Copy constructor.

operator=

OEHighlightByStick &operator=(const OEHighlightByStick &rhs)

Assignment operator.

CreateCopy

OEHighlightBase *CreateCopy() const

Deep copy constructor that returns a copy of the object. The memory for the returned OEHighlightByStick object is dynamically allocated and owned by the caller.

GetAtomExternalHighlightRatio

double GetAtomExternalHighlightRatio() const

Returns the ratio of the external highlight of the atoms.

See also

• OEHighlightByStick.SetAtomExternalHighlightRatio method

GetAtomLabelMonochrome

bool GetAtomLabelMonochrome() const

Returns whether or not the color of the atom label of the highlighted atom(s) is changed.

See also

• OEHighlightByStick.SetAtomLabelMonochrome method

GetColor

const OESystem::OEColor &GetColor() const

Returns the color of the highlighting.

See also

• OEHighlightByStick.SetColor method

• OEColor class

GetStickWidthScale

double GetStickWidthScale() const

Returns the multiplier that can be used to increase or decrease the stick width of the highlighted bond(s).

See also

• OEHighlightByStick.SetStickWidthScale method

SetAtomExternalHighlightRatio

void SetAtomExternalHighlightRatio(bool ratio)

Sets the ratio of the external highlight of the atoms i.e. atom highlights are extended to bonds not being highlighted.

ratio

This value has to be in the range of [0.0, 0.5].

Example (Figure: Example of using the SetAtomExternalHighlightRatio method)

OEHighlightByStick highlight = new OEHighlightByStick(oechem.getOELightOrange());
highlight.SetAtomExternalHighlightRatio(0.33);

Example of using the SetAtomExternalHighlightRatio method

Example of scaling the ‘Stick’ style highlighting along with the molecule

See also

• OEHighlightByStick.GetColor method

SetAtomLabelMonochrome

void SetAtomLabelMonochrome(bool monochrome)

Sets whether or not to change the color of the atom label of the highlighted atom(s).

Example (Figure: Example of using the SetAtomLabelMonochrome method)

OEHighlightByStick highlight = new OEHighlightByStick(oechem.getOELightOrange());
highlight.SetAtomLabelMonochrome(false);

Example of using the SetAtomLabelMonochrome method

See also

• OEHighlightByStick.GetAtomLabelMonochrome method

SetColor

void SetColor(const OESystem::OEColor &color)

Sets the color of the highlighting.

Example (Figure: Example of using the SetColor method)

highlight.SetColor(oechem.getOELightOrange());

Example of using the SetColor method

See also

• OEHighlightByStick.GetColor method

• OEColor class

SetStickWidthScale

void SetStickWidthScale(double stickWidthScale)

Sets the multiplier that can be used to increase or decrease the stick width of the highlighted bond(s).

Example (Figure: Example of using the SetStickWidthScale method)

OEHighlightByStick highlight = new OEHighlightByStick(oechem.getOELightOrange());
highlight.SetStickWidthScale(5.0);

Example of using the SetStickWidthScale method

See also

• OEHighlightByStick.GetStickWidthScale method