Spruce TK ExamplesΒΆ

The following table lists the currently available Spruce TK examples:

Program Description
make_design_units constructing design units from a PDB (due to loop modeling this example takes ~10 min)
make_apo_design_units constructing apo design units from a PDB using a site residue input (due to loop modeling this example takes ~10 min)
simplesuperposition simple superposition of two proteins
secondarystructuresuperposition secondary structure superposition of two proteins
extract_biounits_remarks extract biounits from PDB header remarks
extract_biounits_ref extract biounits from a sequence alignment to a reference protein

Examples: