Spruce TK ExamplesΒΆ
The following table lists the currently available Spruce TK examples:
Program | Description |
---|---|
make_design_units | constructing design units from a PDB (due to loop modeling this example takes ~10 min) |
make_apo_design_units | constructing apo design units from a PDB using a site residue input (due to loop modeling this example takes ~10 min) |
simplesuperposition | simple superposition of two proteins |
secondarystructuresuperposition | secondary structure superposition of two proteins |
extract_biounits_remarks | extract biounits from PDB header remarks |
extract_biounits_ref | extract biounits from a sequence alignment to a reference protein |
Examples: