OEPeptideDisplayOptions¶

class OEPeptideDisplayOptions

This class represents the OEPeptideDisplayOptions class that encapsulates properties that determine how a peptide is depicted.

See also

OEDrawPeptide function

Code Example

Depicting Peptides OpenEye Python Cookbook recipe

Constructors¶

OEPeptideDisplayOptions(unsigned int style=OEPeptideLabelStyle::Default)

Default constructor.

../../_images/OEPeptideDisplayOptions_Default.svg

Peptide depiction with default options¶

OEPeptideDisplayOptions(const OEPeptideDisplayOptions &rhs)

Copy constructor.

operator=¶

OEPeptideDisplayOptions &operator=(const OEPeptideDisplayOptions &rhs)

Assignment operator.

GetAminoAcidScale¶

double GetAminoAcidScale() const

Returns the scaling factor of amino-acid components in interactive mode.

See also

OEPeptideDisplayOptions.SetAminoAcidScale method

GetInteractive¶

bool GetInteractive() const

Returns whether the generated svg image will be interactive.

See also

OEPeptideDisplayOptions.SetInteractive method

GetLabelStyle¶

unsigned int GetLabelStyle() const

Returns the style that controls the label of the amino acid circles are displayed. The return value is taken from the OEPeptideLabelStyle namespace.

See also

OEPeptideDisplayOptions.SetLabelStyle method
OEPeptideLabelStyle namespace

SetAminoAcidScale¶

void SetAminoAcidScale(double scale)

Sets the scaling factor of amino-acid components in interactive mode.

scale: This value has to be in a range of [0.25, 0.75]. The default value is 0.50.

Note

This option has to be used along with the OEPeptideDisplayOptions.SetInteractive method

Example:

opts = oegrapheme.OEPeptideDisplayOptions()
opts.SetInteractive(True)
opts.SetAminoAcidScale(0.75)

Note

This functionality is only available for .svg image format. In other image formats it has no effect.

SetInteractive¶

void SetInteractive(bool interactive)

Sets whether the generated svg image will be interactive. In interactive mode the amino acid components of the compact peptide representation are depicted on mouse over.

Example:

opts = oegrapheme.OEPeptideDisplayOptions()
opts.SetInteractive(True)

Note

This functionality is only available for .svg image format. In other image formats it has no effect.

SetLabelStyle¶

void SetLabelStyle(unsigned int style)

Sets the style that controls how labels inside the amino acid circles are displayed.

style: This value has to be from the OEPeptideLabelStyle namespace.

Example:

opts = oegrapheme.OEPeptideDisplayOptions()
opts.SetLabelStyle(oegrapheme.OEPeptideLabelStyle_SingleLetter)

../../_images/OEPeptideDisplayOptions_SetLabelStyle.svg

Peptide depiction with single letter style¶

See also

OEPeptideLabelStyle namespace