Grapheme Toolkit 1.5.3.1

• Introduction
• Theory
  • Annotating Atoms and Bonds
  • Drawing a Molecule Surface
  • Drawing a Ligand-Protein Complex Surface
  • Depicting Property Maps
• Examples
  • Grapheme Examples
    • Depicting BFactor
    • Depicting Active Site Interactions
    • Depicting Shape and Color Atom Overlaps
  • Python Cookbook Examples
• Preliminary API
  • OEDrawIridiumData
• API
  • OEGrapheme Classes
    • OE2DActiveSiteDisplay
    • OE2DActiveSiteDisplayOptions
    • OE2DActiveSiteLegendDisplayOptions
    • OE2DPropMap
    • OEAlignedDepictionFrom3DOptions
    • OEAtomGlyphBase
    • OEAtomGlyphCircle
    • OEBondGlyphArrow
    • OEBondGlyphBase
    • OEBondGlyphCircle
    • OEBondGlyphCross
    • OEBondGlyphCurvedArrow
    • OEBondGlyphScissors
    • OEBondGlyphStitch
    • OEBondGlyphZigZag
    • OEColorGradientDisplayOptions
    • OEColorGradientLabel
    • OEColorForceFieldDisplay
    • OEColorForceFieldLegendDisplayOptions
    • OEColorOverlapDisplayOptions
    • OEDepictionFrom3DOptions
    • OENearestResidue
    • OEPeptideDisplayOptions
    • OEPlotMarker
    • OERamachandranPlot
    • OEResidueSVGMarkupBase
    • OEResidueSVGNoMarkup
    • OEResidueSVGStandardMarkup
    • OEShapeOverlapDisplay
    • OEShapeOverlapDisplayOptions
    • OEShapeQueryDisplay
    • OEShapeQueryDisplayOptions
    • OESurfaceArc
  • OEGrapheme Basic Arc Drawing Classes
    • OEAlphaRainbowArcFxn
    • OEBrickRoadArcFxn
    • OECastleArcFxn
    • OECogArcFxn
    • OEComplexSurfaceArcFxnBase
    • OEDefaultArcFxn
    • OEDefaultBuriedArcFxn
    • OEDefaultCavityArcFxn
    • OEDefaultSolventArcFxn
    • OEDefaultVoidArcFxn
    • OEEyelashArcFxn
    • OEFlowerArcFxn
    • OENecklaceArcFxn
    • OENullArcFxn
    • OEOliveBranchArcFxn
    • OEPearlsArcFxn
    • OERaceTrackArcFxn
    • OERailroadTrackArcFxn
    • OESawArcFxn
    • OESimpsonArcFxn
    • OEStitchArcFxn
    • OESunArcFxn
    • OESurfaceArcFxnBase
    • OEWreathArcFxn
  • OEGrapheme Constants
    • OE2DPropMapSetup
    • OEActiveSiteRenderStyle
    • OECircleStyle
    • OEColorAtomStyle
    • OELegendLocation
    • OEPatternDirection
    • OEPeptideLabelStyle
    • OEPlotMarkerStyle
    • OEShapeOverlapDisplayStyle
    • OESurfaceArcScale
    • OESurfaceArcStyle
  • OEGrapheme Functions
    • OEAddComplexSurfaceArcs
    • OEAddGlyph
    • OEAddLigandHighlighting
    • OEAddResidueHighlighting
    • OEClearSurfaceArcFxn
    • OEConfigure2DPropMap
    • OEDraw2DSurface
    • OEDrawActiveSiteLegend
    • OEDrawBFactorMapLegend
    • OEDrawCircle
    • OEDrawColorForceFieldLegend
    • OEDrawColorGradient
    • OEDrawPeptide
    • OEDrawResidues
    • OEDrawROCSScores
    • OEDrawSurfaceArc
    • OEDrawUnpairedInteractionMapLegend
    • OEGet2DSurfaceArcs
    • OEGetMoleculeSurfaceScale
    • OEGetNearbyAtom
    • OEGetNearbyBond
    • OEGetNearbyResidue
    • OEGetNearestAtom
    • OEGetNearestBond
    • OEGetNearestResidue
    • OEGetSurfaceArcFxn
    • OEGraphemeGetArch
    • OEGraphemeGetLicensee
    • OEGraphemeGetPlatform
    • OEGraphemeGetRelease
    • OEGraphemeGetSite
    • OEGraphemeGetVersion
    • OEGraphemeIsLicensed
    • OEHasSurfaceArcFxn
    • OEPrepareActiveSiteDepiction
    • OEPrepareAlignedDepictionFrom3D
    • OEPrepareDepictionFrom3D
    • OERenderActiveSite
    • OERenderActiveSiteMaps
    • OERenderBFactorMap
    • OERenderContactMap
    • OERenderColorOverlap
    • OERenderRamachandranPlot
    • OERenderShapeOverlap
    • OERenderShapeQuery
    • OERenderUnpairedInteractionMap
    • OESetSurfaceArcFxn
    • OESetup2DPropMap
  • OEGrapheme Basic Circle and Arc Drawing Functions
    • OEDrawAlphaRainbowCircle
    • OEDrawAlphaRainbowSurfaceArc
    • OEDrawBrickRoadCircle
    • OEDrawBrickRoadSurfaceArc
    • OEDrawCastleCircle
    • OEDrawCastleSurfaceArc
    • OEDrawCogCircle
    • OEDrawCogSurfaceArc
    • OEDrawDefaultCircle
    • OEDrawDefaultSurfaceArc
    • OEDrawEyelashCircle
    • OEDrawEyelashSurfaceArc
    • OEDrawFlowerCircle
    • OEDrawFlowerSurfaceArc
    • OEDrawGreekKeyCircle
    • OEDrawNecklaceCircle
    • OEDrawNecklaceSurfaceArc
    • OEDrawOliveBranchCircle
    • OEDrawOliveBranchSurfaceArc
    • OEDrawPearlsCircle
    • OEDrawPearlsSurfaceArc
    • OEDrawRaceTrackCircle
    • OEDrawRaceTrackSurfaceArc
    • OEDrawRailroadTrackCircle
    • OEDrawRailroadTrackSurfaceArc
    • OEDrawSawCircle
    • OEDrawSawSurfaceArc
    • OEDrawSimpsonCircle
    • OEDrawSimpsonSurfaceArc
    • OEDrawStitchCircle
    • OEDrawStitchSurfaceArc
    • OEDrawSunCircle
    • OEDrawSunSurfaceArc
    • OEDrawWreathCircle
    • OEDrawWreathSurfaceArc
• Release History
  • Grapheme TK 1.5.3
  • Grapheme TK 1.5.2
    • New features
    • Minor bug fixes
  • Grapheme TK 1.5.1.3
  • Grapheme TK 1.5.1.0
  • Grapheme TK 1.5.0
  • Grapheme TK 1.4.7
  • Grapheme TK 1.4.6
  • Grapheme TK 1.4.5
  • Grapheme TK 1.4.4
  • Grapheme TK 1.4.3
    • New features
  • Grapheme ^TM TK 1.4.2
    • New features
    • Minor bug fixes
  • Grapheme ^TM TK 1.4.1
  • Grapheme ^TM TK 1.4.0
    • New features
  • Grapheme^TM TK 1.3.7
    • New features
    • Minor bug fixes
  • Grapheme^TM TK 1.3.6
    • New features
    • New features (Preliminary API)
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme^TM TK 1.3.5
    • New features
    • Minor bug fixes
    • Java-specific changes
    • C#-specific changes
  • Grapheme^TM TK 1.3.4
    • New features
    • Minor bug fixes
  • Grapheme^TM TK 1.3.3
    • New features
    • Preliminary API
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme^TM TK 1.3.2
    • New features
    • Minor bug fixes
  • Grapheme TK 1.3.1
    • New features
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.3.0
    • New features
    • Documentation changes
  • Grapheme TK 1.2.3
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.2.2
    • New features
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.2.1
    • Major bug fixes
    • Documentation changes
  • Grapheme TK 1.2.0
    • New features
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.1.3
    • New features
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.1.2
    • New features
    • Major bug fixes
    • Documentation changes
  • Grapheme TK 1.1.1
    • New features
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.1.0
    • New features
    • Major bug fixes
    • Documentation changes
  • Grapheme TK 1.0.6
    • New features
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.0.5
    • New features
  • Grapheme TK 1.0.4
    • New features
    • Major bug fixes
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.0.3
    • New features
    • Minor bug fixes
    • Documentation changes
  • Grapheme TK 1.0.2
    • Minor bug fix
    • Documentation changes
  • Grapheme TK 1.0.1
    • Minor bug fixes
  • Grapheme TK 1.0.0
    • New features