OEFastaToMolΒΆ

bool OEFastaToMol(OEMolBase &mol, const std::string &str)

Converts a FASTA sequence into a molecule.

The following code demonstrates how to create a molecule from a FASTA sequence using the OEFastaToMol function and prints out the number of alpha carbon atoms in the molecule.

mol = oechem.OEGraphMol()

oechem.OEFastaToMol(mol, "AVILMPTWSTNQCGPRHKDE")
print(oechem.OECount(mol, oechem.OEIsCAlpha()))

See also