Spruce TK ExamplesΒΆ

The following table lists the currently available Spruce TK examples:

Program

Description

make_design_units.py

constructing design units from a PDB (due to loop modeling this example takes ~10 min)

make_apo_design_units

constructing apo design units from a PDB using a site residue input (due to loop modeling this example takes ~10 min)

superpose.py

superposition of two proteins

extract_biounits_remarks.py

extract biounits from PDB header remarks

extract_biounits_ref.py

extract biounits from a sequence alignment to a reference protein

findpockets.py

find pockets and some of its properties from a protein or DesignUnit

Examples: