OEGetSmiStringOrder(OEMolBase &mol,
                           unsigned int flavor = OESMILESFlag::DEFAULT);

OESystem::OEIterBase<const OEAtomBase>*
       OEGetSmiStringOrder(const OEMolBase &mol,
                           unsigned int flavor = OESMILESFlag::DEFAULT);

Returns an iterator over the heavy atoms of a molecule, in the order in which they appear in the canonical SMILES string. Several variants of SMILES format are supported by using different flavors from the OESMILESFlag namespace.

OEGraphMol mol = new OEGraphMol();
OEChem.OESmilesToMol(mol, "N1CCCC1");

foreach (OEAtomBase atom in OEChem.OEGetSmiStringOrder(mol))
    Console.WriteLine(atom.GetIdx() + " " + OEChem.OEGetAtomicSymbol(atom.GetAtomicNum()));

See also