# Matched Pair analysis using a multi-threaded generation of an MMP index¶

A program that performs a multi-threaded matched pair analysis of a set of structures for indexing and saves the generated index file for subsequent loading and querying.

Schematic representation of the Matched Pair Analysis process

## Command Line Interface¶

Usage: ./CreateMMPIndexThreaded [ -threads num_threads ] index.sdf output.mmpidx