2025.3
  • Release 2025.3
    • 2025.3 Release Notes
      • Release Highlights
      • User Interface Notes
        • Bug Fixes
      • Orion Back End Notes
      • Information for Programmers
    • Previous Releases
      • 2025.2 Release Notes
        • Release Highlights
        • User Interface Notes
        • Orion Back End Notes
        • Information for Programmers
      • 2025.1.2 Release Notes
        • Bug Fix
        • Features of the 2025.1.1 Release
      • 2025.1.1 Release Notes
        • User Interface Notes
        • Orion Back End Notes
        • Information for Programmers
      • 2024.3.1 Release Notes
        • Highlights of the Current Release
        • Molecule Search Query Sketcher
        • Molecule Search Results Section
        • User Account Roles for Molecule Search
        • Data Page
        • Deprecation of Search Services and Databases
        • Bug Fixes
        • Information for Programmers
      • 2024.2.1 Release Notes
        • Highlights of the Current Release
        • New and Improved Features
        • Bug Fixes
        • Information for Programmers
      • 2024.1.1 Release Notes
        • Highlights
        • Information for Programmers
      • 2023.3.1 Release Notes
        • Highlights
        • Project Data
        • Analyze Page
        • Information for Programmers
      • 2023.2.1 Release Notes
        • Highlights Video
      • 2023.1.1 Release Notes
        • Highlights
        • Project Summary
        • Project Data
        • Floe Page
        • 3D Modeling
        • Analyze
        • Programmers’ Notes
      • 2022.3.1 Release
        • Highlights
        • General
        • Project Data
        • 3D Modeling
        • Analyze
        • Floe UI
      • 2022.2.1 Release
        • Highlights
        • General
        • Project Summary
        • Project Data
        • 3D Modeling
        • Analyze
        • Floe UI
      • 2022.1.1 Release
        • Highlights
        • General
        • Project Data
        • 3D Modeling
        • Analyze
        • Floe UI
        • Profile page
      • 2021.2.1 Release
        • Highlights
        • General
        • Project Summary
        • Project Data
        • 3D Modeling
        • Analyze
        • Floe UI
        • Admin
        • Data Sources
      • Orion 2021.1.2
        • Bug Fix
        • New features of the Orion 2021.1 release
      • Orion 2021.1.1
        • Selected Training Videos
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Modeling
        • Analyze
        • Floe User Interface
        • Data Sources
        • Admin Mode
      • 2020.3.1 Release
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Viewer
        • Analyze
        • Floe UI
        • Data Sources
        • Admin Mode
      • 2020.2.1 Release
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Viewer
        • Analyze
        • Floe UI
        • Data Sources
        • Admin Mode
      • 2020.1.1 Release
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Viewer
        • Analyze
        • Floe UI
        • Admin
      • 2019.5.1 Release
        • Highlights
        • General
        • Home
        • Project Data
        • 3D Viewer
        • Analyze
        • Floe UI
      • 2019.4.1 Release
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Viewer
        • Analyze
        • Iterative Design
        • Floe UI
        • Data Sources
        • Admin Mode
      • 2019.3.1 Release
        • Highlights
        • General
        • Home
        • Project Summary
        • Project Data
        • 3D Viewer
        • Analyze
        • Iterative Design
        • Floe UI
        • Data Sources
        • Admin Mode
      • 2019.2.1 Release
        • Supported Browsers
        • Supported Platforms
        • General
        • Home
        • Project Summary
        • Project Data
        • Analyze
        • Floe UI
        • 3D Viewer
        • Iterative Design
        • Data Sources
  • Orion Home Page
  • Project Page
  • Data Page
    • Data Page
      • Organizing and Sharing Data in Folders
        • Tile View
      • Manipulating Data
        • Searching for Data
        • Uploading Data
        • Downloading and Exporting Data
        • Moving Data Between Projects
        • Deleting Data
        • Preserving Data of a Removed User
        • Necessary Actions for Accounts on Pre-2021 Versions of Orion
      • Data Page Video Tutorial
      • Subfolders
        • Favorite Subfolders
        • Deleting Subfolders
        • Moving a Subfolder
      • Shared Spaces
      • Collection Metadata
      • Discussion Boards
      • Organization Data Page
        • OpenEye Data Subfolder
        • Policy for Curation of Databases
    • 2D Sketcher Tool
      • Specify an Atom
  • 3D & Analyze Page
    • Data Panel Shortcuts
    • Active Data Bar
      • Active Datasets
      • Filters
      • Records
      • Snapshot Link
      • Discussion Boards
      • Data Handling
      • Layouts
    • Spreadsheet
    • Plot
    • Data & Columns
    • 3D Viewer
      • 3D Data Tree Options
      • Badges
      • How to Manipulate Record Information in the Data Trees
        • Visibility of Records
        • Records Menu
      • Convert a 2D Molecule to a 3D Conformer
      • Sequence Viewer
      • 3D Viewer Menu
        • File Tab
        • View Tab
        • Select Tab
        • Modeling Tab
        • Tools Tab
        • Help Tab
      • Toolbar
        • Hide Visible Objects
        • Center and Fit Buttons
        • Style
        • Switch Mouse Mode
        • Measurements
        • Viewing Interactions
        • Edit Molecule
        • Binding Site Options
    • Modeling Features
      • Edit DU Receptor
      • Generate Analogs
    • Protein Modeling
    • Sample Uses of the 3D & Analyze Page
  • Floe Page
    • Floes Tab
      • How to Find a Floe in Orion
      • The Job Form
    • Jobs Tab
      • Detailed Job Information
      • Generating the Debugging File
      • Floe Visualization
        • Additional Cube Information
      • Floe Report
    • Editor Tab
    • Packages Tab
  • Macro Molecules Page
  • Molecule Search Page
    • How to Add a Query Molecule
    • Add a Query Using the Sketcher
      • Color Tool for 3D Search
      • Additional Sketcher Tools for Substructure Search
    • Search Context
      • Fingerprints
      • Similarity
      • Shape and Color
    • Types of Search
      • 2D Similarity Search
      • 3D Similarity Search
      • Substructure Search
      • Exact Match Search
      • Title Search
      • Setting up a Search
    • Search Results
      • 2D Similarity Search Results
      • 3D Similarity Search Results
      • Substructure Search Results
      • Exact Match Search Results
      • Using a Result for a New Search
    • How to Retain Search Results
      • Save Results
      • Search History
  • System Information
    • System Information
      • Stack Status
    • Databases
    • Scaling Groups
    • Cost Accounting
      • Current Balance
      • Date Range
      • AWS Total Costs
      • Downloadable Cost Data
      • Jobs
      • Ledger Entries
    • AWS Tiering
    • Users
      • Deleting Users
        • Transfer of Ownership
        • Deleting a User
  • User Profile Page
    • Orion Admin View
  • Tutorials
    • An Orion Docking Workflow
    • Background Information about Docking
  • Orion Video Tutorials
    • Getting Started
    • Analyzing Data
    • 3D Features
    • Data Organization
    • Discussion Boards
    • Additional User Tutorials
    • Administration
  • OpenEye Glossary of Terms
  • Orion Support
  • Legal Notices
    • Copyright and Trademarks
    • Sample Code
    • Citation
      • Orion®
      • Orion Floes
      • Toolkits and Applications
      • Publications for Bibliographies
        • Orion
        • AFITT and FLYNN Applications
        • OEDocking Application and Toolkit
        • OMEGA Application and Toolkit
        • ROCS Application
      • OpenEye MMDS Web Service
    • Technology Licensing
    • GCC
      • GCC RUNTIME LIBRARY EXCEPTION
      • GNU GENERAL PUBLIC LICENSE
Orion User Guide
  • All OpenEye Documentation »
  • Contents »
  • Index

Index

A | B | C | D | E | F | G | I | J | L | M | N | O | P | R | S | T | U | V | Z

A

  • AMI
  • Analyze page
  • API
  • APIs
  • apo protein
  • apo proteins
  • asymmetric unit
  • AUC

B

  • B-factor
  • binding
    • receptor
  • biological unit
  • bug-fix release

C

  • canonical isomeric SMILES
  • canonical SMILES
  • cheminformatics functions
  • chiral atom
  • chiral bond
  • CIP
  • conformer
  • conformers
  • CPK
  • CSV
  • cube
  • cubes
  • CUDA
  • CXSMILES

D

  • delete
    • user
  • design unit
  • dock
  • docking

E

  • excipient

F

  • FASTA
  • feature release
  • filtering
  • fingerprint
  • fit
    • regression
  • floe
  • floes

G

  • GRASP

I

  • in-memory
  • InChI
  • InChIKey
  • Iridium

J

  • JSON

L

  • LINGO

M

  • MACCS
  • marching cubes
  • MDL
  • memory-mapped
  • MMDS
  • module
  • modules
  • MOL
  • molecular
    • spreadsheet
  • molecule sketcher
  • Monte Carlo

N

  • nonterminal atom

O

  • OEB
  • Orion back end
  • Orion Platform

P

  • package
  • packages
  • popcount
  • preliminary API
  • project

R

  • raster image
  • receptor
    • binding
  • receptors
  • regression
    • fit
  • ROC curve
  • rotatable bond

S

  • script
  • scripts
  • SDF
  • shard
  • sketcher
  • SMARTS
  • SMILES
  • SMIRKS
  • spreadsheet
    • molecular
  • stable API
  • stereo atom
  • stereo bond
  • structural key
  • SVG

T

  • tagging
  • Tanimoto

U

  • user
    • delete

V

  • vector image

Z

  • zwitterion
  • zwitterionic

© Copyright 2025, Cadence Design Systems, Inc. Last updated on May 21, 2025.