Index

A

add_new_stage() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) AMI apo protein

apo proteins asymmetric unit AUC

B

B-factor

biological unit bug-fix release

C

canonical isomeric SMILES canonical SMILES chiral atom chiral bond CIP conformer conformers

CPK create_collection() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) CSV cube cubes CUDA CXSMILES

D

delete_parmed (orionmdcore.mdrecord.mdrecord.MDDataRecord property) delete_stage() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) delete_stage_by_idx() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) delete_stage_by_name() (orionmdcore.mdrecord.mdrecord.MDDataRecord method)

delete_stages (orionmdcore.mdrecord.mdrecord.MDDataRecord property) design unit dock docking

E

excipient

F

FASTA feature release

fingerprint floe floes

G

get_conf_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_extra_data_tar (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_flask (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_flask_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_last_stage (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_lig_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_ligand (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_ligand_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_md_components (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_primary (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_protein (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_protein_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_record (orionmdcore.mdrecord.mdrecord.MDDataRecord property)

get_stage() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_by_idx() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_by_name() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_info() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_logs() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_state() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_topology() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stage_trajectory() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) get_stages (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_stages_names (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_title (orionmdcore.mdrecord.mdrecord.MDDataRecord property) get_water_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property) GRASP

H

has_conf_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_extra_data_tar (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_flask_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_lig_id (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_ligand (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_ligand_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_md_components (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_parmed (orionmdcore.mdrecord.mdrecord.MDDataRecord property)

has_protein (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_protein_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_stage() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) has_stage_info() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) has_stage_name() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) has_stages (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_title (orionmdcore.mdrecord.mdrecord.MDDataRecord property) has_water_traj (orionmdcore.mdrecord.mdrecord.MDDataRecord property)

I

in-memory InChI

InChIKey Iridium

J

JSON

L

LINGO

M

MACCS marching cubes MDDataRecord (class in orionmdcore.mdrecord.mdrecord) MDL MDStageRecord (class in orionmdcore.mdrecord.mdrecord)

memory-mapped module orionmdcore.mdrecord.mdrecord modules MOL Monte Carlo

N

nonterminal atom

O

OEB Orion back end

Orion Platform orionmdcore.mdrecord.mdrecord module

P

package packages

popcount preliminary API project

R

raster image receptor

receptors ROC curve rotatable bond

S

script scripts SDF set_conf_id() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_extra_data_tar() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_flask() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_flask_id() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_lig_id() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_ligand() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_ligand_traj() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_md_components() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_parmed() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_primary() (orionmdcore.mdrecord.mdrecord.MDDataRecord method)

set_protein() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_protein_traj() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_stage_info() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_title() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) set_water_traj() (orionmdcore.mdrecord.mdrecord.MDDataRecord method) shard SMARTS SMILES SMIRKS stable API stereo atom stereo bond structural key SVG

T

Tanimoto

V

vector image

Z

zwitterion

zwitterionic