Bibliography

Atilgan-2001

Atilgan, A.R.; Durrell, S.R.; Jernigan, R.L.; Demirel, M.C.; Keskin O.; Bahar I.

Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model.

Biophys. J. 2001, 80 (1), 505–515.

DOI: 10.1016/s0006-3495(01)76033-x

Bahar-2010

Bahar, I.; Lezon, T.R.; Bakan, A.; Shrivastava, I.H.

Normal Mode Analysis of Biomolecular Structures: Functional Mechanisms of Membrane Proteins.

Chem. Rev. 2010, 110 (3), 1463–1497.

DOI: 10.1021/cr900095e

Porter-2019

Porter, J.R.; Moeder, K.E.; Sibbald C.A.; Zimmerman, M.I.; Hart, K.M.; Greenberg, M.J.; Bowman, G.R.

Cooperative Changes in Solvent Exposure Identify Cryptic Pockets, Switches, and Allosteric Coupling.

Biophys J. 2019, 116 (5), 818–830.

DOI: 10.1016/j.bpj.2018.11.3144

Woodcock-2008

Woodcock, H.L.; Zheng, W.; Ghysels, A.; Shao, Y.; Kong, J.; Brooks, B.R.

Vibrational Subsystem Analysis: A Method for Probing Free Energies and Correlations in the Harmonic Limit.

J. Chem. Phys. 2008, 129 (21), 214109.

DOI: 10.1063/1.3013558

Zuckerman-2017

Zuckerman, D.M.; Chong, L.T.

Weighted Ensemble Simulation: Review of Methodology, Applications, and Software.

Annu. Rev. Biophys. 2017, 46, 43–57.

DOI: 10.1146/annurev-biophys-070816-033834