Bibliography

[Bandyopadhyay-2008]

Bandyopadhyay, D.; Mehler, E.L.

Quantitative Expression of Protein Heterogeneity: Response of Amino Acid Side Chains to Their Local Environment.

Proteins: Struct., Funct., Bioinf. 2008, 72 (2), 646–659.

DOI: 10.1002/prot.21958

[Black-1991]

Black, S.D.; Mould, D.R.

Development of Hydrophobicity Parameters to Analyze Proteins Which Bear Post- or Cotranslational Modifications.

Anal. Biochem. 1991, 193 (1), 72–82.

DOI: 10.1016/0003-2697(91)90045-u

[Dunbar-2015]

Dunbar, J.; Deane, C. M.

ANARCI: Antigen Receptor Numbering and Receptor Classification.

Bioinformatics 2015, 32 (2), 298-300.

DOI: 10.1093/bioinformatics/btv552

[Eisenberg-1986]

Eisenberg, D.; McLachlan, A.D.

Solvation Energy in Protein Folding and Binding.

Nature 1986, 319, 199–203.

DOI: 10.1038/319199a0

[Jain-2017]

Jain, T.; Sun, T.; Durand, S.; Hall, A.; Houston, N.R.; Nett, J.H.; Krauland, E.M.; Xu, Y.; Vásquez, M.; Wittrup, K.D.; et al.

Biophysical Properties of the Clinical-Stage Antibody Landscape.

PNAS 2017, 114 (5), 944–949.

DOI: 10.1073/pnas.1616408114

[Kyte-1982]

Kyte, J.; Doolittle, R.F.

A Simple Method for Displaying the Hydropathic Character of a Protein.

J. Mol. Biol. 1982, 157 (1), 105–132.

DOI: 10.1016/0022-2836(82)90515-0

[Meek-1980]

Meek, J.L.

Prediction of Peptide Retention Times in High-Pressure Liquid Chromatography on the Basis of Amino Acid Composition.

PNAS 1980, 77 (3), 1632–1636.

DOI: 10.1073/pnas.77.3.1632

[Miyazawa-1985]

Miyazawa, S.; Jernigan, R.L.

Estimation of Effective Interresidue Contact Energies from Protein Crystal Structures: Quasi-Chemical Approximation.

Macromolecules 1985, 18 (3), 534–552.

DOI: 10.1021/ma00145a039

[Raybould-2019]

Raybould, M.I.J.; Marks, C.; Krawczyk, K.; Taddese, B.; Nowak, J.; Lewis, A.P.; Bujotzek, A.; Shi, J.; Deane, C.M.

Five Computational Developability Guidelines for Therapeutic Antibody Profiling.

PNAS 2019, 116 (10), 4025-4030.

DOI: 10.1073/pnas.1810576116

[Rose-1985]

Rose, G.D.; Geselowitz, A.R.; Lesser, G.J.; Lee, R.H.; Zehfus, M.H.

Hydrophobicity of Amino Acid Residues in Globular Proteins.

Science 1985, 229 (4716), 834–838.

DOI: 10.1126/science.4023714

[Wimley-1996]

Wimley, W.C.; White, S.H.

Experimentally Determined Hydrophobicity Scale for Proteins at Membrane Interfaces.

Nat. Struct. Mol. Biol. 1996, 3 (10), 842–848.

DOI: 10.1038/nsb1096-842