Export Dataset to Fasta

Category Paths

Follow one of these paths in the Orion user interface, to find the floe.

  • Product-based/AbXtract

  • Role-based/Computational Chemist

  • Role-based/Bioinformatician

  • Solution-based/Virtual-screening/DB Preparation

  • Solution-based/Biologics/Antibody Design

Description

This floe exports sequences from a provided dataset to a fasta file. It can export upto four fields from a dataset of interest. This floe can be used in conjuction with the humanizaiton floe to export humanized sequences to a fasta file.

Related Floes Humanize Fv Antibodies

Promoted Parameters

Title in user interface (promoted name)

Inputs

Input Dataset of Sequences (in): Input dataset containing the sequences of interest. Multiple fields in each record can contain the relevant sequences

  • Required

  • Type: data_source

Antibody Name Field (code_field): The field on the input dataset that will identify the antibody’s name. This could be a name, code, title, or other descriptor.

  • Required

  • Type: field_parameter::string

Sequence Field 1 (sequence_field_1): Field on the input dataset containing a sequence to be exported

  • Required

  • Type: field_parameter::string

Sequence Field 2 (sequence_field_2): Field on the input dataset containing a sequence to be exported

  • Type: field_parameter::string

Sequence Field 3 (sequence_field_3): Field on the input dataset containing a sequence to be exported

  • Type: field_parameter::string

Sequence Field 4 (sequence_field_4): Field on the input dataset containing a sequence to be exported

  • Type: field_parameter::string

Outputs

Ouput Fasta Name (output_fasta_name): Name for the fasta file that will be exported.

  • Required

  • Type: string

  • Default: Output Fasta

Failed Sequence Output (failed_out): Any records that do not have the requried fields will fail.

  • Required

  • Type: dataset_out

  • Default: Failed_Sequences