Spruce

• Biomodeling
  • Spruce BioUnit Extract
  • Spruce Minimize Design Unit Cube
  • Spruce Superpose
  • Spruce Update Design Unit Cube
  • Spruce capping cube
  • Spruce mutation cube
  • Spruce residue state cube
  • Spruce rotamers cube
  • Spruce sidechain builder cube
  • Spruce subset cube
  • Spruce subset within cube
  • Spruce subset within cube
  • Spruce swamp metal cube
• Format conversion
  • DesignUnit Type ETL
  • Spruce DU to Mol
  • Spruce DU to Mol Simple
• Structure Preparation
  • Add hydrogens to design unit
  • Create DU From Pockets
  • Create DU from OEPocket and f-pocket pockets
  • Create DU from f-pocket pockets
  • DU Validator
  • Enumerate Sites
  • Input Files for Spruce
  • Input PDB Codes for Spruce
  • Loop Builder
  • Make Design Unit from Target
  • Make Design Unit from Target and Ligand
  • Prepare Biological Units
  • Spruce Depiction
  • Spruce Prep
  • Spruce Prep for MMDS
  • Spruce Prep for MMDS - Find duplicate PDB IDs
  • Spruce depiction cube for MMDS
  • Structure Standardization