Subset the Number of Fields for Export - AbXtract

Category Paths

  • Solution-based/Biologics/Antibody Design

  • Role-based/Bioinformatician

  • Role-based/Biologist

  • Product-based/AbXtract

  • Task-based/Data Science/Conversion

Description

Select a subset of all fields for Export. If for any reason, the field is not present in the dataset the Floe will ignore it and include only those fields that are present.

Parameter title in user interface (promoted name)

  • Identifier Fields to Keep (id_fields) type: string: NOTE: Sanger Well ID (if used) is specified by the ‘id’ field
    Default: [‘seq_id’, ‘barcode_group’]
    Choices: id, sample_name, barcode_group, barcode_round, processed_roi, overlay_roi, seq_id

Parameter title in user interface (promoted name)

  • Sequence Fields to Keep (string_fields) type: string:
    Default: [‘match_name_1’, ‘match_name_2’, ‘sequence_aa_1’, ‘sequence_aa_2’, ‘cdr3_aa_1’, ‘cdr3_aa_2’, ‘read’]
    Choices: read, sequence_1, sequence_aa_1, sequence_aa_1_2, match_name_1, match_name_1_2, fr1_1, fr2_1, fr3_1, fr4_1, cdr1_1, cdr2_1, cdr3_1, fr1_aa_1, fr2_aa_1, fr3_aa_1, fr4_aa_1, cdr1_aa_1, cdr2_aa_1, cdr3_aa_1, merged_cdrs_1, merged_cdrs_2, merged_cdrs_1_2, sequence_2, sequence_aa_2, match_name_2, fr1_2, fr2_2, fr3_2, fr4_2, cdr1_2, cdr2_2, cdr3_2, fr1_aa_2, fr2_aa_2, fr3_aa_2, fr4_aa_2, cdr1_aa_2, cdr2_aa_2, cdr3_aa_2

Parameter title in user interface (promoted name)

  • Output CSV Filename (file_name) type: file_out: All records are written to downstream csv file, must contain the *.csv extension
    Default: subset_fields.csv

Parameter title in user interface (promoted name)

  • Output Name of the Subsetted Dataset (data_out) type: dataset_out: Name of the exported dataset
    Default: subset_fields

Parameter title in user interface (promoted name)

  • Failed Dataset Output Name (data_out) type: dataset_out: Contains failed records from both upstream and downstream processes
    Default: problematic.export_subselected_abxtract