Structure Preparation
- Add hydrogens to design unit
- Create DU From Pockets
- Create DU from OEPocket and f-pocket pockets
- Create DU from f-pocket pockets
- DU Validator
- Enumerate Sites
- Input Files for Spruce
- Input PDB Codes for Spruce
- Loop Builder
- Make Bio DUs
- Make Design Unit from Target
- Make Design Unit from Target and Ligand
- Spruce Depiction
- Spruce Prep
- Spruce Prep for MMDS
- Spruce Prep for MMDS - Find duplicate PDB IDs
- Spruce depiction cube for MMDS
- Structure Standardization