Advanced Tutorials
In these advanced tutorials, we will show you how to run the modular advanced floes in sequence to identify cryptic pockets for beta-lactamase.
- Solvate and Equilibrate Target Protein
- Calculate Normal Modes
- Run a Weighted Ensemble MD Simulation
- Perform Weighted Ensemble MD Analysis
- Probe Occupancy Analysis
- Dynamic Probe Analysis
- Combined Probe Binding Site Analysis
- Exposon Analysis
- Ligandable Medoids Extraction
- Pocket Ranking by Ligandability Score