Crystal RMSD Deduplication Floe
Category Paths
Follow one of these paths in the Orion user interface, to find the floe.
Solution-based/Formulation
Role-based/Formulation Scientist
Product-based/Crystal Structure Prediction
Task-based/Crystal Structure Prediction
Description
- Crystal RMSD Deduplication Floe calculates the RMSD between pairs of crystals of a given
Dataset and removes any duplicates. Each record is assumed to contain a CIF file as a string. If an ‘IEFF Lattice Full Energy(kcal)’ field is present, an additional filtering process is performed where any structure with an energy above the minimum value (between all structures) is discarded.
Promoted Parameters
Title in user interface (promoted name)
Maximum cluster size for RMSD calculation (crystal_rmsd_N) type: integer: Number of molecules in the cluster to represent the crystal geometry.Default: 20 RMSD tolerance (crystal_rmsd_dedup_tolerance) type: decimal: RMSD tolerance for defining a duplicate. Please use values in the range 0.2…5.0A.Default: 0.5 , Min: 0.2, Max: 5.0 Crystal RMSD failures (failure) type: dataset_out: Failures of Crystal RMSD deduplication.Default: deduplication_failures Input Crystal Structures (in) type: data_source: Input Dataset containing input cif files. Output Dataset with Crystal RMSD comparisons. (out) type: dataset_out: Resulting Dataset containing Crystal RMSD deduplication information.Default: crystal_rmsd_deduplicated