MMDS 01. Make/Update PDB File CollectionΒΆ

Category Paths

  • Product-based/SPRUCE

  • Product-based/MMDS

  • Role-based/MMDS Staff User/MMDS Data Prep

  • Solution-based/Virtual-screening/Target Preparation

  • Solution-based/Hit to Lead/Target Preparation

  • Solution-based/Hit to Lead/Target Preparation/Structural Data Preparation

  • Task-based/Target Prep & Analysis/Protein Preparation

Description

MMDS 01. Make/Update PDB File Collection generates or appends (if exists) a collection that contains PDB protein structures.

If the provided structures are newer a version or new entrant, they are added to the collection.

Parameter title in user interface (promoted name)

  • Output Dataset (data_out) type: dataset_out: Output dataset to write to
    Default: retrieve_failures

Parameter title in user interface (promoted name)

  • Input structure (PDB/MMCIF) files (structure_inp_files) type: file_in:

Parameter title in user interface (promoted name)

  • Collection Name (coll_name) type: string: Name of a new or existing collection for biomolecular source data.For existing collections, an ID can also be used. When supplying a name of an existing collection the latest with that name is updated (if multiple exist).
    Default: Customer PDB File Collection