MMDS 01. Make/Update Proasis PDB Collection

Category Paths

Follow one of these paths in the Orion user interface, to find the floe.

• Product-based/SPRUCE

• Product-based/MMDS

• Role-based/MMDS Staff User/MMDS Data Prep

• Solution-based/Virtual-screening/Target Preparation

• Solution-based/Hit to Lead/Target Preparation

• Solution-based/Hit to Lead/Target Preparation/Structural Data Preparation

• Task-based/Target Prep & Analysis/Protein Preparation

Description

MMDS 01. Make/Update Proasis PDB Collection generates or appends (if exists) a collection that contains PDB protein structures.

Missing structures from Proasis are downloaded and added to the collection.

Parameter title in user interface (promoted name)

• Output Dataset (data_out) type: dataset_out: Output dataset to write to

  Default: retrieve_failures

Parameter title in user interface (promoted name)

• Proasis Server URL (server) type: string: Base Proasis server URL, e.g. https://pdb.company.com:8080/

Parameter title in user interface (promoted name)

• Proasis Server Version (server_version) type: string: Proasis server version, e.g. vX.Y

  Default: v1.4

Parameter title in user interface (promoted name)

• Collection Name (coll_name) type: string: Name of a new or existing collection for biomolecular source data.For existing collections, an ID can also be used. When supplying a name of an existing collection the latest with that name is updated (if multiple exist).

  Default: Proasis PDB Collection

Parameter title in user interface (promoted name)

• Proasis Server URL (server) type: string: Base Proasis server URL, e.g. https://pdb.company.com:8080/

Parameter title in user interface (promoted name)

• Proasis Server Version (server_version) type: string: Proasis server version, e.g. vX.Y

  Default: v1.4