OESuperpositionOptions

Attention

This API is currently available in C++ and Python.

class OESuperpositionOptions

This class represents OESuperpositionOptions that sets the optional parameters for structural superposition using the OEStructuralSuperposition class.

See also

Constructors

OESuperpositionOptions()

Default constructor.

OESuperpositionOptions(const OESuperpositionOptions &rhs)

Copy constructor.

operator=

OESuperpositionOptions &operator=(const OESuperpositionOptions &argOpts)

Assignment operator.

AddSiteResidue

void AddSiteResidue(const std::string &argSiteResidue)

Add a single site residue for OESuperpositionType_Site -based superpositions based on a site-specific string that takes the form: <residue name>:<residue number>:<insertion code>:<chain id>.

See also

ClearLigandConstraints

void ClearLigandConstraints()

Clear the stored ligand constraints, if they exist.

See also

ClearSiteResidues

void ClearSiteResidues()

Remove any existing site residues from the OESuperpositionOptions object that would be used in the OESuperpositionType_Site -based superposition calculations.

See also

GetDist

double GetDist() const

Get the cutoff distance used in the nearest neighbors calculation for the site residue constraints (default = 5.0 Angstroms) for OESuperpositionType_Site -based superpositions.

GetLigandConstraints

void GetLigandConstraints(OEChem::OEMolBase& refLig, OEChem::OEMolBase& fitLig) const

Returns by reference the reference and fit ligand constraints that are stored.

See also

GetSiteResidues

std::vector<std::string> GetSiteResidues() const

Get the site residues used in the OESuperpositionType_Site -based calculation.

GetSuperpositionType

unsigned GetSuperpositionType() const

Get the type of superposition to be performed. Types are given from the constants given in OESuperpositionType. The default type is OESuperpositionType_Default.

HasLigandConstraints

bool HasLigandConstraints() const

Returns whether or not ligand constraints have been set.

See also

SetDist

void SetDist(double argDist)

Set the cutoff distance used in the nearest neighbors calculation for the site residue constraints for OESuperpositionType_Site -based superpositions.

SetLigandConstraints

void SetLigandConstraints(const OEChem::OEMolBase& refLig, const OEChem::OEMolBase& fitLig)

Sets the ligand constraints that will be used for the superposition.

See also

SetSiteResidues

void SetSiteResidues(const std::vector<std::string> &argSiteResidues)

Set all site residues at once for OESuperpositionType_Site -based superpositions using a string vector, where each string takes the form <residue name>:<residue number>:<insertion code>:<chain id>.

See also

SetSuperpositionType

bool SetSuperpositionType(unsigned type)

Set the type of superposition to be performed. Types are taken from the constants given in OESuperpositionType.