Required Parameters

-fit <filename>

File containing the 3D biomolecules that will be structurally superposed.

File format for -fit can be one of:

File type	Extension
OEDesignUnit	.oedu
OEBinary	.oeb .oeb.gz
PDB	.pdb .ent .pdb.gz .ent.gz
mmCIF	.cif .cif.gz

-ref <filename>

File containing the 3D biomolecules that will act as the reference for the structural superposition.

File format for -ref can be one of:

File type	Extension
OEDesignUnit	.oedu
OEBinary	.oeb .oeb.gz
PDB	.pdb .ent .pdb.gz .ent.gz
mmCIF	.cif .cif.gz