Required Parameters

-fit <filename>

File containing the 3D biomolecules that will be structurally superposed.

File format for -fit can be one of:

File type Extension
OEDesignUnit .oedu
OEBinary .oeb .oeb.gz
PDB .pdb .ent .pdb.gz .ent.gz
mmCIF .cif .cif.gz
-ref <filename>

File containing the 3D biomolecules that will act as the reference for the structural superposition.

File format for -ref can be one of:

File type Extension
OEDesignUnit .oedu
OEBinary .oeb .oeb.gz
PDB .pdb .ent .pdb.gz .ent.gz
mmCIF .cif .cif.gz