Atom Labeling, Aromatic Displays, and other DisplaysΒΆ

There are multiple ways to display different aspects of chemistry and other ways to manipulate the molecule display in PICTO. In the view menu of PICTO the depiction of aromatics can be swapped between Kekule, Circle, and Dashed, and the molecule can be labelled based off certain atomic labels: No Atom Labeling, Atom Stereochemistry, Atom Locants, Atom Indices, and Atom AAMaps. The different aromatic displays can be seen in Figure: Aromatic Displays.

../../_images/aromaticKekule.png ../../_images/aromaticCircle.png

Kekule

Circle

../../_images/aromaticDashed.png

Dashed

The different atom labels (expect AAMaps) can be seen in Figure: Atom Labels.

../../_images/noAtomLabel.png ../../_images/atomStereo.png

No Atom Labeling

Atom Stereochemistry

../../_images/atomLocant.png ../../_images/atomIndices.png

Atom Locants

Atom Indices

There are three other displays the can be used together to manipulate the molecule display in the sketcher. Figure: Fit in Window displays the molecule when Fit in Window is toggled. Figure: Super Atom displays the difference in the sketcher between Super Atom being toggled. Figure: Hide/Show Hydrogens displays the molecule with and without the hydrogens depicted in the sketcher. The hydrogens can be toggled with the checkbox at the bottom of PICTO labelled Hide Hydrogens.

../../_images/FitToWindow.png
../../_images/noSuperAtom.png ../../_images/superAtom.png

Without Super Atom

With Super Atom

../../_images/showHydro.png ../../_images/hideHydro.png

Showing the Hydrogens

Hiding the Hydrogens