Required Parameters


File containing one or more molecular connection tables to be processed by OMEGA. Multiple input files of the same format can be merged together into a single input file using the cat command. A pipe can be used to avoid writing the merged input file to disk.

cat filename1.ism filename2.ism | oeomega classic -in .ism -out output.oeb.gz

Supported file formats: can, cdx, cif, csv, cxsmiles, dat, ent, fasta, inchi, ism, isosmi, json, mdl, mmd, mmod, mol, mol2, mol2h, oeb, oez, pdb, sd, sdf, seq, skc, smi, syb, usm, xyz, and the corresponding compressed formats (i.e., xx.gz).