OEApplications 2025.1.1
Highlights of Applications Release 2025.1
FastROCS: Grid Query Support
Bioisostere TK: Feature Extensions
SZYBKI: Robust Protein–Ligand Optimization
Supported Platforms
Related Application Versions
Detailed Release Notes 2025.1
AFITT
BROOD
EON
OEDOCKING
OMEGA
PICTO
PKA-PROSPECTOR
QUACPAC
ROCS
SITEHOPPER
SPRUCE
SZMAP
SZYBKI
Previous Release Highlights
Release Highlights 2024.2.1
Release Highlights 2024.2.0
Supported Platforms
Related Application Versions
Release Highlights 2024.1.3
Release Highlights 2024.1.0
Supported Platforms
Related Application Versions
Release Highlights 2023.2.3
Release Highlights 2023.1.1
Release Highlights 2023.1.0
Release Highlights 2022.2.2
Release Highlights 2022.2.1
Release Highlights 2022.1
Release Highlights 2021.2
Release Highlights 2021.1
Release Highlights 2020.2.2
Release Highlights 2020.2
Release Highlights 2020.1.1
Release Highlights 2020.1
Release Highlights 2020.0
Release Highlights 2019.Nov
Release Highlights 2019.May
OEApplications 2018.Nov
Applications
Getting Started
Installation and Platform Notes
Release Cycle
Legal Notices
AFITT 3.0.2.1
Overview
Applications
Utility Programs
FLYNN
Coot Integration
Utilities
Theory
Release History
Citation
BROOD 4.2.0.1
Introduction
vBROOD
BROOD
CHOMP
Utilities
Overview
Human Complement C3a Receptor Example
Fragment Joining Tutorial
Generating a Database with Crystallographic Conformations
Theory
BROOD Fragment Database
Release History
Citation
EON 3.1.1.1
Introduction
EON
Theory
Release History
Citation
OEDocking 4.3.3.1
Introduction
Tutorials
Theory
FRED
HYBRID
POSIT
Make Receptor
Utilities
Release History
Citation
OMEGA 6.1.0.1
Introduction
FILTER
OMEGA
Utilities
Theory
Release History
Citation
PICTO 5.1.3.1
Introduction
PICTO
Release History
Citation
pKa-Prospector 1.2.5.1
Introduction
pKa-Prospector
Release History
Citation
QUACPAC 2.2.6.1
Introduction
FixpKa
MolCharge
pKaTyper
Tautomers
MolCharge Theory
Release History
molcharge
Appendix: Complete list of
-method
options
Citation
ROCS 3.8.0.1
Introduction
ROCS
vROCS
Utilities
ROCS Tutorials
Theory
Release History
List of selected ROCS publications
Citation
SiteHopper 2.1.2.1
Introduction
SiteHopper Search
SiteHopper build
Release History
Citation
SPRUCE 1.7.0.1
Introduction
SPRUCE
Superposition
EnumSites
GetStructure
LoopDBBuilder
DU2PDB
du2mmcif
Release History
Citation
SZMAP 1.7.2.1
Introduction
Spruce Before Szmap
SZMAP
GamePlan
Utilities
VIDA Extensions
Tutorials
Theory
Release History
Appendix 1: SZMAP Grids
Appendix 2: SZMAP Atom Properties
Citation
SZYBKI 2.9.0.1
Overview
Applications
Utility Programs
SZYBKI
FREEFORM
Theory
Utilities
Release History
Citation
VIDA 5.0.7.2
Introduction
Installation and Platform Notes
File I/O
3D Display
2D Display
Spreadsheet
List Management
Processes
Molecule Manipulation
Custom Views
Selection Language
Scripting
Extensions
Preferences
Menus
Examples
VIDA Python API
Release History
Citation
OpenEye Glossary of Terms
Bibliography
Applications-
All OpenEye Documentation
»
Contents
»
Applications
»
VIDA 5.0.7.2
VIDA 5.0.7.2
¶
Introduction
General Concepts
Scope
Layout
Undo / Redo
Mouse Map
User Directory
Help
Installation and Platform Notes
Enterprise Installation for Windows
File I/O
Opening Files
Closing Files
Saving Files
Importing Files
Exporting Files
Drag and Drop
Copy and Paste
3D Display
User Interaction
Rendering
Stereo
Viewpoint
Bookmarks
Tiled Display
Toolbars
Display Widgets
Molecular Visualization
Grid Visualization
Grid Types
Reentrant Grids
Surface Visualization
Symmetry
2D Display
Preview vs. Viewer
Interaction
Advanced Depiction Options
Spreadsheet
Basic Usage
Sorting
Displaying Data
Organizing Columns
Creating New Columns
Filtering
Statistics
Formatting Columns
Advanced Depiction Options
Importing/Exporting
Atom Spreadsheet
Residue Spreadsheet
List Management
Introduction
Browsing
Views
List Columns
List Manipulation
Processes
Processes
Pipes
Molecule Manipulation
Creating Molecules
Editing Molecules
Custom Views
FRED View
EON View
ROCS View
Selection Language
Introduction
Operators
Lists and Ranges
Properties
Macros/Pre-defined sets
Scripting with ScratchScope
Scripting
Journal File
Startup File
Scripts Directory
Scripting API
Scripting Window
OpenEye Toolkits
Customizing the User Interface
Extensions
Example Extensions
Extension Manager
Creating Extensions
Distributing Extensions
Preferences
Menus
File
Edit
View
Data
Style
Bookmarks
Tools
Select
Window
Help
Examples
Data
Scripts
VIDA Python API
General Functions
Scope Functions
User Interface Functions
Display Functions
Object Functions
Molecule Builder Functions
Data Analysis Functions
Deprecated Functions
Release History
VIDA 5.0.7
VIDA 5.0.6
VIDA 5.0.5
VIDA 5.0.4
VIDA 5.0.3
VIDA 5.0.2
VIDA 5.0.1
VIDA 5.0.0
VIDA 4.4.0
VIDA 4.3.0
VIDA 4.2.0
VIDA 4.1.1
VIDA 4.1.0
VIDA 4.0.3
VIDA 4.0.0
VIDA 3.0.0
VIDA 2.1.2
VIDA 2.1.1
VIDA 2.1.0
VIDA 2.0.2
Citation