Introduction

Overview

The SiteHopper application is used to compare binding sites between proteins.

Applications

The SiteHopper distribution comprises 2 main applications:

sitehopper_build

The sitehopper_build program is used to convert a set of OEDesignUnit (*.oedu) files to a database that can be searched with the sitehopper_search program.

sitehopper_search

The sitehopper_search program is used to search a database of OEDesignUnits for binding sites similar to a query OEDesignUnit.