Introduction

Overview

The SiteHopper application is used to compare binding sites between proteins.

Applications

The SiteHopper distribution comprises 2 applications:

SiteHopper_build

The SiteHopper_build program is used to convert a set of DesignUnit oedu files to a database that can be searched with the SiteHopper_search program.

SiteHopper_search

The SiteHopper_search program is used to search a database of proteins for binding sites similar to a query protein.