SZMAP WorkflowΒΆ

The sections represent a tutorial, going through a typical workflow and analysis of the PDB entry 4STD. Example input and output files and a list of commands for the following workflow are found in {SZMAP Version Examples}/tutorial_files Images are provided to guide the user when visualizing SZMAP results.

The workflow consists of three basic parts:

  • Preparing molecules so that they can be used as input to SZMAP or GamePlan.
  • Running SZMAP or GamePlan.
  • Analyzing the results in VIDA with the help of the SZMAP extensions.