- -in (-i)¶
This flag specifies the input molecule file that contains the database of molecules you want to break up into a fragment database. If you have pregenerated fragments rather than whole molecules, please see the -userFrags flag (see below).
- -out (-o)¶
This flag specifies the location in which to create the BROOD database. CHOMP will create a new directory using the specified flag and will fill that new directory with a series of files.