This is first release of the SiteHopper application suite. SiteHopper
can search a database containing hundreds of thousands of design units for
proteins with similar binding sites to a query design unit in a few minutes
using an NVIDIA GPU. SiteHopper can also create this database from a series
of biomolecular structures in
OEDU format. The SiteHopper application
suite consists of the following applications:
sitehopper_search searches a database of design units for proteins with binding sites similar to a query design unit.
A large database of patches based on the public is available for download in a platform-independent format.