VIDA 3.0.0¶

August 2011

New Features¶

Added dynamic help system
Added new 2D depiction color schemes: black on white, white on black, color on white and color on black
Added new molecule coloring schemes: amino, chain, group, cpk, cpknew, shapely, bfactor, formal charge, and partial charge
Added new surface hydrophobicity scales: charifson, eisenberg, kyte-dolittle, and white-octanol
Added support for reading attached grids and surfaces in OEB files
Added support for reading Spicoli geometric annotations
Added support for reading FRED receptor files
Added new hydrogen style: polar hydrogens only
Added multiple new atom and bond label types (including one for OEChem generic data)
Added new 3D display mouse maps for Coot and PyMol

Anti-aliasing of text and 2D depictions
Much better control over placement of dock windows
Dock windows can be stacked on top of each other in tabs
Single toolbar at the top of the application
Additional popup toolbars placed around edge of main window
Enabled grid contour transparency
Hydrogen style is now a molecule specific property instead of a global property
C-Alpha trace display is now a molecule specific property instead of a global property
Ribbon display is now a molecule specific property instead of a global property
Many miscellaneous 3D rendering improvements and accelerations
Many miscellaneous user interface improvements

Fixed a problem on some graphics cards where only aromatic rings would be drawn when a molecule was in stick mode