Due to its command line nature, AFITT-CL tools (such as FLYNN) can be integrated with other crystallographic applications such as Coot (and WinCoot). OpenEye supplies a simple script that allows users of Coot to use FLYNN directly from the Coot GUI.

This script adds “Fit Ligand...” option, a “Make cif...” and a “Fit sidechains...” options to the extensions menu.


Coot Integration


COOT 0.8 Integration